• using R version 2.6.2 (2008-02-08)
  • checking for file 'apTreeshape/DESCRIPTION' ... OK
    •
  • this is package 'apTreeshape' version '1.4-0'
  • checking package dependencies ... OK
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  • checking if this is a source package ... OK
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  • checking whether package 'apTreeshape' can be installed ... OK
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  • checking package directory ... OK
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  • checking for portable file names ... OK
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  • checking for sufficient/correct file permissions ... OK
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  • checking DESCRIPTION meta-information ... OK
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  • checking top-level files ... OK
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  • checking index information ... OK
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  • checking package subdirectories ... OK
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  • checking R files for non-ASCII characters ... OK
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  • checking R files for syntax errors ... OK
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  • checking whether the package can be loaded ... OK
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  • checking whether the package can be loaded with stated dependencies ... OK
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  • checking for unstated dependencies in R code ... OK
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  • checking S3 generic/method consistency ... OK
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  • checking replacement functions ... OK
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  • checking foreign function calls ... OK
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  • checking R code for possible problems ... OK
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  • checking Rd files ... WARNING
    Rd files with unknown encoding:
    cladesize.Rd
    cutreeshape.Rd
    dbtrees.Rd
    likelihood.test.Rd
    rtreeshape.Rd
    sackin.Rd
    shape.statistic.Rd
    subtree.test.Rd
    summary.treeshape.Rd
    tipsubtree.Rd
    treeshape.Rd

    See the chapter 'Writing R documentation files' in manual 'Writing R
    Extensions'.
  • checking Rd cross-references ... OK
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  • checking for missing documentation entries ... OK
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  • checking for code/documentation mismatches ... OK
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  • checking Rd \usage sections ... OK
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  • checking data for non-ASCII characters ... OK
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  • creating apTreeshape-Ex.R ... OK
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  • checking examples ... ERROR
    Running examples in 'apTreeshape-Ex.R' failed.
    The error most likely occurred in:

    > ### * aldous.test
    >
    > flush(stderr()); flush(stdout())
    >
    > ### Name: aldous.test
    > ### Title: Visualizing balance via scatter diagrams
    > ### Aliases: aldous.test
    > ### Keywords: htest
    >
    > ### ** Examples
    >
    > library(quantreg)
    > if(!inherits(try(open(url("http://www.google.com")), silent = TRUE), "try-error")) {
    + ## The Yule model is fitting to the data better than the PDA
    + aldous.test(dbtrees(db="pandit", tree=61, quiet=TRUE, class="treeshape"), xmin=10)
    +
    + ## For this tree, the PDA model provides a better fit than the Yule model
    + aldous.test(dbtrees(db="pandit", tree=120, quiet=TRUE, class="treeshape"))
    +
    + ## Test with a huge balanced tree:
    + aldous.test(rbiased(2000, p=.5))
    +
    + }
    Warning in tree.build(STRING[[i]]) : NAs introduced by coercion
    Warning in add.terminal() : NAs introduced by coercion
    Error in if (sum(list.obj[[i]]$edge[, 1] == "-1") == 1) { :
    missing value where TRUE/FALSE needed
    Calls: aldous.test -> identical -> dbtrees -> pandit -> read.tree2
    Execution halted
    * elapsed time (check, wall clock): 0:52