• using R version 2.15.3 (2013-03-01)
• using platform: i386-apple-darwin9.8.0 (32-bit)
• using session charset: ASCII
• checking for file 'abcdeFBA/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'abcdeFBA' version '0.4'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package 'abcdeFBA' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  FBA_solve: possible error in Rglpk_solve_LP(obj = fba_object$obj, mat =
  fba_object$mat, dir = fba_object$dir, rhs = fba_object$rhs, bounds =
  fba_object$bounds, types = fba_object$types, max = fba_object$max,
  control = list(verbose = verbosity)): unused argument(s) (control =
  list(verbose = verbosity))
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... ERROR
  Running examples in 'abcdeFBA-Ex.R' failed
  The error most likely occurred in:
  
  > ### Name: FBA_solve
  > ### Title: FBA_solve, a function to solve CBM problems
  > ### Aliases: 'solve FBA problem' FBA_solve
  >
  > ### ** Examples
  > # Flux Balance Analysis performed on a core-metabolism model of E.coli
  > data(Ecoli_core)
  > FBA_solve(fba_object=Ecoli_core,precision=6)
  Error in Rglpk_solve_LP(obj = fba_object$obj, mat = fba_object$mat, dir = fba_object$dir, :
  unused argument(s) (control = list(verbose = verbosity))
  Calls: FBA_solve -> Rglpk_solve_LP
  Execution halted
• elapsed time (check, wall clock): 0:37