• using R version 2.13.2 Patched (2011-09-30 r57339)
• using platform: i386-apple-darwin9.8.0 (32-bit)
• using session charset: ASCII
• checking for file 'SweaveListingUtils/DESCRIPTION' ... OK
• this is package 'SweaveListingUtils' version '0.5.2'
• package encoding: latin1
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'SweaveListingUtils' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking sizes of PDF files under inst/doc ... OK
• checking examples ... WARNING
  checking a package with encoding 'latin1' in an ASCII locale
  
  OK
• checking differences from 'SweaveListingUtils-Ex.Rout' to 'SweaveListingUtils-Ex.Rout.save' ...
  2c2
  < :startupmsg> Utilities for start-up messages (version 0.7.2)
  ---
  > :startupmsg> Utilities for start-up messages (version 0.7.1)
  8,9c8
  < :SweaveListingUtils> TeX listings package (version
  < :SweaveListingUtils> 0.5.2)
  ---
  > :SweaveListingUtils> TeX listings package (version 0.5)
  400c399
  < \newcommand{\pkgversion}{{\tt 2.3.2}}
  ---
  > \newcommand{\pkgversion}{{\tt 2.3}}
  455,495c454,494
  < numericDeriv,nobs,nls.control,nls,nlminb,%
  < naresid,naprint,napredict,na.pass,na.omit,%
  < na.fail,na.exclude,na.contiguous,na.action,mood.test,%
  < monthplot,model.weights,model.tables,model.response,model.offset,%
  < model.matrix.lm,model.matrix.default,model.matrix,model.frame.lm,model.frame.glm,%
  < model.frame.default,model.frame.aovlist,model.frame,model.extract,medpolish,%
  < median.default,mcnemar.test,mauchly.test,mauchley.test,mantelhaen.test,%
  < manova,makepredictcall,makeARIMA,make.link,ls.print,%
  < ls.diag,logLik,loess.smooth,loess.control,loess,%
  < loadings,lm.wfit.null,lm.wfit,lm.influence,lm.fit.null,%
  < lm.fit,lines.ts,line,lag.plot,lag,%
  < ksmooth,ks.test,kruskal.test,knots,kmeans,%
  < kernel,kernapply,isoreg,is.tskernel,is.ts,%
  < is.stepfun,is.mts,is.leaf,is.empty.model,inverse.gaussian,%
  < interaction.plot,integrate,influence.measures,heatmap,hclust,%
  < hatvalues.lm,hatvalues,glm.fit.null,glm.fit,glm.control,%
  < get_all_vars,getInitial,friedman.test,fligner.test,fitted.values,%
  < fisher.test,filter,factor.scope,factanal,expand.model.frame,%
  < estVar,embed,eff.aovlist,ecdf,dummy.coef,%
  < drop.terms,drop.scope,dmultinom,dist,diffinv,%
  < diff.ts,dfbeta,df.residual,df.kernel,deriv3.formula,%
  < deriv3.default,deriv3,deriv.formula,deriv.default,density.default,%
  < dendrapply,delete.response,decompose,cutree,cpgram,%
  < cov2cor,cov.wt,cor.test,cophenetic,cooks.distance,%
  < contrasts<-,contr.treatment,contr.sum,contr.poly,contr.helmert,%
  < contr.SAS,constrOptim,confint.default,confint,complete.cases,%
  < cmdscale,clearNames,chisq.test,ccf,case.names,%
  < cancor,bw.ucv,bw.nrd0,bw.nrd,bw.bcv,%
  < bw.SJ,biplot,binom.test,bartlett.test,bandwidth.kernel,%
  < asOneSidedFormula,as.ts,as.stepfun,as.hclust,as.formula,%
  < as.dist,as.dendrogram,arima0.diag,arima0,arima.sim,%
  < arima,ar.yw,ar.ols,ar.mle,ar.burg,%
  < ar,ansari.test,anovalist.lm,anova.mlm,anova.lmlist,%
  < anova.lm,anova.glmlist,anova.glm,aggregate.ts,aggregate.default,%
  < aggregate.data.frame,addmargins,add.scope,acf2AR,acf,%
  < TukeyHSD.aov,TukeyHSD,StructTS,SSweibull,SSmicmen,%
  < SSlogis,SSgompertz,SSfpl,SSfol,SSbiexp,%
  < SSasympOrig,SSasympOff,SSasymp,SSD,PP.test,%
  < NLSstRtAsymptote,NLSstLfAsymptote,NLSstClosestX,NLSstAsymptotic,KalmanSmooth,%
  < KalmanRun,KalmanLike,KalmanForecast,HoltWinters,Box.test,%
  < BIC,ARMAtoMA,ARMAacf,AIC%
  ---
  > numericDeriv,nls.control,nls,nlminb,naresid,%
  > naprint,napredict,na.pass,na.omit,na.fail,%
  > na.exclude,na.contiguous,na.action,mood.test,monthplot,%
  > model.weights,model.tables,model.response,model.offset,model.matrix.lm,%
  > model.matrix.default,model.matrix,model.frame.lm,model.frame.glm,model.frame.default,%
  > model.frame.aovlist,model.frame,model.extract,medpolish,median.default,%
  > mcnemar.test,mauchly.test,mauchley.test,mantelhaen.test,manova,%
  > makepredictcall,makeARIMA,make.link,ls.print,ls.diag,%
  > logLik,loess.smooth,loess.control,loess,loadings,%
  > lm.wfit.null,lm.wfit,lm.influence,lm.fit.null,lm.fit,%
  > lines.ts,line,lag.plot,lag,ksmooth,%
  > ks.test,kruskal.test,knots,kmeans,kernel,%
  > kernapply,isoreg,is.tskernel,is.ts,is.stepfun,%
  > is.mts,is.leaf,is.empty.model,inverse.gaussian,interaction.plot,%
  > integrate,influence.measures,heatmap,hclust,hatvalues.lm,%
  > hatvalues,glm.fit.null,glm.fit,glm.control,get_all_vars,%
  > getInitial,friedman.test,fligner.test,fitted.values,fisher.test,%
  > filter,factor.scope,factanal,expand.model.frame,estVar,%
  > embed,eff.aovlist,ecdf,dummy.coef,drop.terms,%
  > drop.scope,dmultinom,dist,diffinv,diff.ts,%
  > dfbeta,df.residual,df.kernel,deriv3.formula,deriv3.default,%
  > deriv3,deriv.formula,deriv.default,density.default,dendrapply,%
  > delete.response,decompose,cutree,cpgram,cov2cor,%
  > cov.wt,cor.test,cophenetic,cooks.distance,contrasts<-,%
  > contr.treatment,contr.sum,contr.poly,contr.helmert,contr.SAS,%
  > constrOptim,confint.default,confint,complete.cases,cmdscale,%
  > clearNames,chisq.test,ccf,case.names,cancor,%
  > bw.ucv,bw.nrd0,bw.nrd,bw.bcv,bw.SJ,%
  > biplot,binom.test,bartlett.test,bandwidth.kernel,asOneSidedFormula,%
  > as.ts,as.stepfun,as.hclust,as.formula,as.dist,%
  > as.dendrogram,arima0.diag,arima0,arima.sim,arima,%
  > ar.yw,ar.ols,ar.mle,ar.burg,ar,%
  > ansari.test,anovalist.lm,anova.mlm,anova.lmlist,anova.lm,%
  > anova.glmlist,anova.glm,aggregate.ts,aggregate.default,aggregate.data.frame,%
  > addmargins,add.scope,acf2AR,acf,TukeyHSD.aov,%
  > TukeyHSD,StructTS,SSweibull,SSmicmen,SSlogis,%
  > SSgompertz,SSfpl,SSfol,SSbiexp,SSasympOrig,%
  > SSasympOff,SSasymp,SSD,PP.test,NLSstRtAsymptote,%
  > NLSstLfAsymptote,NLSstClosestX,NLSstAsymptotic,KalmanSmooth,KalmanRun,%
  > KalmanLike,KalmanForecast,HoltWinters,Box.test,ARMAtoMA,%
  > ARMAacf,AIC%
  547,553c546,552
  < select.list,savehistory,rtags,removeSource,remove.packages,%
  < relist,recover,readCitationFile,read.table,read.socket,%
  < read.fwf,read.fortran,read.delim2,read.delim,read.csv2,%
  < read.csv,read.DIF,rc.status,rc.settings,rc.options,%
  < rc.getOption,promptPackage,promptData,personList,person,%
  < packageVersion,packageStatus,packageDescription,package.skeleton,package.contents,%
  < old.packages,object.size,nsl,news,new.packages,%
  ---
  > select.list,savehistory,rtags,remove.packages,relist,%
  > recover,readCitationFile,read.table,read.socket,read.fwf,%
  > read.fortran,read.delim2,read.delim,read.csv2,read.csv,%
  > read.DIF,rc.status,rc.settings,rc.options,rc.getOption,%
  > promptPackage,promptData,personList,person,packageVersion,%
  > packageStatus,packageDescription,package.skeleton,package.contents,old.packages,%
  > object.size,nsl,normalizePath,news,new.packages,%
  558,563c557,561
  < head.matrix,head,glob2rx,getTxtProgressBar,getSrcref,%
  < getSrcLocation,getSrcFilename,getSrcDirectory,getS3method,getFromNamespace,%
  < getCRANmirrors,getAnywhere,formatUL,formatOL,flush.console,%
  < fixInNamespace,findLineNum,file_test,file.edit,dump.frames,%
  < download.packages,download.file,de.setup,de.restore,de.ncols,%
  < data.entry,create.post,count.fields,contrib.url,compareVersion,%
  ---
  > head.matrix,head,glob2rx,getTxtProgressBar,getS3method,%
  > getFromNamespace,getCRANmirrors,getAnywhere,formatUL,formatOL,%
  > flush.console,fixInNamespace,findLineNum,file_test,file.edit,%
  > dump.frames,download.packages,download.file,de.setup,de.restore,%
  > de.ncols,data.entry,count.fields,contrib.url,compareVersion,%
  683,714c681,711
  < sink.number,simplify2array,simpleWarning,simpleMessage,simpleError,%
  < simpleCondition,signalCondition,showConnections,shQuote,setTimeLimit,%
  < setSessionTimeLimit,setNamespaceInfo,setHook,setCConverterStatus,set.seed,%
  < serialize,seq_len,seq_along,seq.int,seq.default,%
  < seq.POSIXt,seq.Date,seek.connection,seek,scan.url,%
  < scale.default,saveRDS,save.image,sample.int,sQuote,%
  < rowsum.default,rowsum.data.frame,rownames<-,rowSums,rowMeans,%
  < row.names<-.default,row.names<-.data.frame,row.names<-,row.names.default,row.names.data.frame,%
  < row.names,round.POSIXt,round.Date,rev.default,retracemem,%
  < restartFormals,restartDescription,replicate,rep.numeric_version,rep.int,%
  < rep.factor,rep.POSIXlt,rep.POSIXct,rep.Date,removeTaskCallback,%
  < removeCConverter,registerS3methods,registerS3method,reg.finalizer,readRenviron,%
  < readRDS,readLines,readChar,readBin,read.table.url,%
  < read.dcf,rcond,rbind.data.frame,rawToChar,rawToBits,%
  < rawShift,rawConnectionValue,rawConnection,raw,rapply,%
  < range.default,quarters.POSIXt,quarters.Date,quarters,qr.solve,%
  < qr.resid,qr.qy,qr.qty,qr.fitted,qr.default,%
  < qr.coef,qr.X,qr.R,qr.Q,pushBackLength,%
  < pushBack,psigamma,prop.table,proc.time,printNoClass,%
  < print.warnings,print.table,print.summaryDefault,print.summary.table,print.srcref,%
  < print.srcfile,print.simple.list,print.rle,print.restart,print.proc_time,%
  < print.packageInfo,print.octmode,print.numeric_version,print.noquote,print.listof,%
  < print.libraryIQR,print.hexmode,print.function,print.factor,print.difftime,%
  < print.default,print.data.frame,print.connection,print.condition,print.by,%
  < print.POSIXlt,print.POSIXct,print.NativeRoutineList,print.Date,print.DLLRegisteredRoutines,%
  < print.DLLInfoList,print.DLLInfo,print.AsIs,prettyNum,pretty.default,%
  < pos.to.env,pmin.int,pmax.int,pipe,pi,%
  < path.package,path.expand,parseNamespaceFile,parse.dcf,parent.frame,%
  < parent.env<-,parent.env,package_version,packageStartupMessage,packageHasNamespace,%
  < packageEvent,package.description,packBits,open.srcfilecopy,open.srcfile,%
  < open.connection,open,on.exit,oldClass<-,oldClass,%
  < nzchar,numeric_version,normalizePath,norm,ngettext,%
  ---
  > sink.number,simpleWarning,simpleMessage,simpleError,simpleCondition,%
  > signalCondition,showConnections,shQuote,setTimeLimit,setSessionTimeLimit,%
  > setNamespaceInfo,setHook,setCConverterStatus,set.seed,serialize,%
  > seq_len,seq_along,seq.int,seq.default,seq.POSIXt,%
  > seq.Date,seek.connection,seek,scan.url,scale.default,%
  > save.image,sample.int,sQuote,rowsum.default,rowsum.data.frame,%
  > rownames<-,rowSums,rowMeans,row.names<-.default,row.names<-.data.frame,%
  > row.names<-,row.names.default,row.names.data.frame,row.names,round.POSIXt,%
  > round.Date,rev.default,retracemem,restartFormals,restartDescription,%
  > replicate,rep.numeric_version,rep.int,rep.factor,rep.POSIXlt,%
  > rep.POSIXct,rep.Date,removeTaskCallback,removeCConverter,registerS3methods,%
  > registerS3method,reg.finalizer,readRenviron,readLines,readChar,%
  > readBin,read.table.url,read.dcf,rcond,rbind.data.frame,%
  > rawToChar,rawToBits,rawShift,rawConnectionValue,rawConnection,%
  > raw,rapply,range.default,quarters.POSIXt,quarters.Date,%
  > quarters,qr.solve,qr.resid,qr.qy,qr.qty,%
  > qr.fitted,qr.default,qr.coef,qr.X,qr.R,%
  > qr.Q,pushBackLength,pushBack,psigamma,prop.table,%
  > proc.time,printNoClass,print.warnings,print.table,print.summaryDefault,%
  > print.summary.table,print.srcref,print.srcfile,print.simple.list,print.rle,%
  > print.restart,print.proc_time,print.packageInfo,print.octmode,print.numeric_version,%
  > print.noquote,print.listof,print.libraryIQR,print.hexmode,print.function,%
  > print.factor,print.difftime,print.default,print.data.frame,print.connection,%
  > print.condition,print.by,print.POSIXlt,print.POSIXct,print.NativeRoutineList,%
  > print.Date,print.DLLRegisteredRoutines,print.DLLInfoList,print.DLLInfo,print.AsIs,%
  > prettyNum,pretty.default,pos.to.env,pmin.int,pmax.int,%
  > pipe,pi,path.expand,parseNamespaceFile,parse.dcf,%
  > parent.frame,parent.env<-,parent.env,package_version,packageStartupMessage,%
  > packageHasNamespace,packageEvent,package.description,packBits,open.srcfilecopy,%
  > open.srcfile,open.connection,open,on.exit,oldClass<-,%
  > oldClass,nzchar,numeric_version,norm,ngettext,%
  716,745c713,741
  < namespaceExport,names<-.POSIXlt,names<-,names.POSIXlt,mostattributes<-,%
  < months.POSIXt,months.Date,months,month.name,month.abb,%
  < mode<-,mget,message,merge.default,merge.data.frame,%
  < memory.profile,memDecompress,memCompress,mem.limits,mean.difftime,%
  < mean.default,mean.data.frame,mean.POSIXlt,mean.POSIXct,mean.Date,%
  < max.col,match.fun,match.call,match.arg,mat.or.vec,%
  < margin.table,mapply,manglePackageName,makeActiveBinding,make.unique,%
  < make.names,lower.tri,logb,lockEnvironment,lockBinding,%
  < loadingNamespaceInfo,loadedNamespaces,loadURL,loadNamespace,list2env,%
  < list.files,list.dirs,library.dynam.unload,library.dynam,lfactorial,%
  < levels<-.factor,levels<-,levels.default,letters,length<-.factor,%
  < length<-,length.POSIXlt,lazyLoadDBfetch,lazyLoadDBexec,lazyLoad,%
  < labels.default,l10n_info,kappa.tri,kappa.qr,kappa.lm,%
  < kappa.default,julian.POSIXt,julian.Date,julian,isdebugged,%
  < isatty,isTRUE,isSymmetric.matrix,isSymmetric,isSeekable,%
  < isS4,isRestart,isOpen,isNamespace,isIncomplete,%
  < isBaseNamespace,is.vector,is.unsorted,is.table,is.symbol,%
  < is.single,is.recursive,is.real,is.raw,is.qr,%
  < is.primitive,is.pairlist,is.package_version,is.ordered,is.object,%
  < is.numeric_version,is.numeric.difftime,is.numeric.POSIXt,is.numeric.Date,is.numeric,%
  < is.null,is.nan,is.name,is.na<-.factor,is.na<-.default,%
  < is.na<-,is.na.numeric_version,is.na.data.frame,is.na.POSIXlt,is.na,%
  < is.matrix,is.logical,is.loaded,is.list,is.language,%
  < is.integer,is.infinite,is.function,is.finite,is.factor,%
  < is.expression,is.environment,is.element,is.double,is.data.frame,%
  < is.complex,is.character,is.call,is.atomic,is.array,%
  < is.R,invokeRestartInteractively,invokeRestart,inverse.rle,intToUtf8,%
  < intToBits,importIntoEnv,identity,identical,icuSetCollate,%
  < iconvlist,iconv,gzfile,gzcon,grepl,%
  < grepRaw,gregexpr,gettextf,gettext,getTaskCallbackNames,%
  ---
  > namespaceExport,names<-,mostattributes<-,months.POSIXt,months.Date,%
  > months,month.name,month.abb,mode<-,mget,%
  > message,merge.default,merge.data.frame,memory.profile,memDecompress,%
  > memCompress,mem.limits,mean.difftime,mean.default,mean.data.frame,%
  > mean.POSIXlt,mean.POSIXct,mean.Date,max.col,match.fun,%
  > match.call,match.arg,mat.or.vec,margin.table,mapply,%
  > manglePackageName,makeActiveBinding,make.unique,make.names,lower.tri,%
  > logb,lockEnvironment,lockBinding,loadingNamespaceInfo,loadedNamespaces,%
  > loadURL,loadNamespace,list2env,list.files,library.dynam.unload,%
  > library.dynam,lfactorial,levels<-.factor,levels<-,levels.default,%
  > letters,length<-.factor,length<-,length.POSIXlt,lazyLoadDBfetch,%
  > lazyLoad,labels.default,l10n_info,kappa.tri,kappa.qr,%
  > kappa.lm,kappa.default,julian.POSIXt,julian.Date,julian,%
  > isdebugged,isatty,isTRUE,isSymmetric.matrix,isSymmetric,%
  > isSeekable,isS4,isRestart,isOpen,isNamespace,%
  > isIncomplete,isBaseNamespace,is.vector,is.unsorted,is.table,%
  > is.symbol,is.single,is.recursive,is.real,is.raw,%
  > is.qr,is.primitive,is.pairlist,is.package_version,is.ordered,%
  > is.object,is.numeric_version,is.numeric.difftime,is.numeric.POSIXt,is.numeric.Date,%
  > is.numeric,is.null,is.nan,is.name,is.na<-.factor,%
  > is.na<-.default,is.na<-,is.na.numeric_version,is.na.data.frame,is.na.POSIXlt,%
  > is.na,is.matrix,is.logical,is.loaded,is.list,%
  > is.language,is.integer,is.infinite,is.function,is.finite,%
  > is.factor,is.expression,is.environment,is.element,is.double,%
  > is.data.frame,is.complex,is.character,is.call,is.atomic,%
  > is.array,is.R,invokeRestartInteractively,invokeRestart,inverse.rle,%
  > intToUtf8,intToBits,importIntoEnv,identity,identical,%
  > icuSetCollate,iconvlist,iconv,gzfile,gzcon,%
  > grepl,gregexpr,gettextf,gettext,getTaskCallbackNames,%
  750,801c746,796
  < getCConverterStatus,getCConverterDescriptions,getAllConnections,gctorture2,gc.time,%
  < formatDL,format.pval,format.octmode,format.numeric_version,format.info,%
  < format.hexmode,format.factor,format.difftime,format.default,format.data.frame,%
  < format.char,format.POSIXlt,format.POSIXct,format.Date,format.AsIs,%
  < formals<-,force,flush.connection,flush,findRestart,%
  < findPackageEnv,findInterval,find.package,file.symlink,file.show,%
  < file.rename,file.remove,file.path,file.link,file.info,%
  < file.exists,file.create,file.copy,file.choose,file.append,%
  < file.access,fifo,factorial,expm1,expand.grid,%
  < eval.parent,environmentName,environmentIsLocked,environment<-,env.profile,%
  < enquote,encodeString,enc2utf8,enc2native,emptyenv,%
  < eapply,dyn.unload,dyn.load,duplicated.numeric_version,duplicated.matrix,%
  < duplicated.default,duplicated.data.frame,duplicated.array,duplicated.POSIXlt,droplevels.factor,%
  < droplevels.data.frame,droplevels,do.call,dir.create,dimnames<-.data.frame,%
  < dimnames<-,dimnames.data.frame,dim<-,dim.data.frame,difftime,%
  < diff.default,diff.POSIXt,diff.Date,diag<-,determinant.matrix,%
  < determinant,det,delayedAssign,default.stringsAsFactors,debugonce,%
  < data.matrix,data.frame,data.class,dQuote,cut.default,%
  < cut.POSIXt,cut.Date,contributors,conditionMessage.condition,conditionMessage,%
  < conditionCall.condition,conditionCall,computeRestarts,comment<-,colnames<-,%
  < colSums,colMeans,codes<-,codes.ordered,codes.factor,%
  < closeAllConnections,close.srcfile,close.connection,class<-,chol.default,%
  < check_tzones,chartr,charToRaw,char.expand,cbind.data.frame,%
  < casefold,capabilities,callCC,c.numeric_version,c.noquote,%
  < c.POSIXlt,c.POSIXct,c.Date,bzfile,by.default,%
  < by.data.frame,browserText,browserSetDebug,browserCondition,bquote,%
  < body<-,bindtextdomain,bindingIsLocked,bindingIsActive,baseenv,%
  < attributes<-,attr<-,attr.all.equal,attachNamespace,assign,%
  < asS4,asS3,asNamespace,as.vector.factor,as.vector,%
  < as.table.default,as.table,as.symbol,as.single.default,as.single,%
  < as.real,as.raw,as.qr,as.pairlist,as.package_version,%
  < as.ordered,as.octmode,as.numeric_version,as.numeric,as.null.default,%
  < as.null,as.name,as.matrix.noquote,as.matrix.default,as.matrix.data.frame,%
  < as.matrix.POSIXlt,as.matrix,as.logical.factor,as.logical,as.list.numeric_version,%
  < as.list.function,as.list.factor,as.list.environment,as.list.default,as.list.data.frame,%
  < as.list.POSIXct,as.list.Date,as.list,as.integer,as.hexmode,%
  < as.function.default,as.function,as.factor,as.expression.default,as.expression,%
  < as.environment,as.double.difftime,as.double.POSIXlt,as.double,as.difftime,%
  < as.data.frame.vector,as.data.frame.ts,as.data.frame.table,as.data.frame.raw,as.data.frame.ordered,%
  < as.data.frame.numeric_version,as.data.frame.numeric,as.data.frame.model.matrix,as.data.frame.matrix,as.data.frame.logical,%
  < as.data.frame.list,as.data.frame.integer,as.data.frame.factor,as.data.frame.difftime,as.data.frame.default,%
  < as.data.frame.data.frame,as.data.frame.complex,as.data.frame.character,as.data.frame.array,as.data.frame.POSIXlt,%
  < as.data.frame.POSIXct,as.data.frame.Date,as.data.frame.AsIs,as.data.frame,as.complex,%
  < as.character.srcref,as.character.octmode,as.character.numeric_version,as.character.hexmode,as.character.factor,%
  < as.character.error,as.character.default,as.character.condition,as.character.POSIXt,as.character.Date,%
  < as.character,as.call,as.array.default,as.array,as.POSIXlt.numeric,%
  < as.POSIXlt.factor,as.POSIXlt.default,as.POSIXlt.dates,as.POSIXlt.date,as.POSIXlt.character,%
  < as.POSIXlt.POSIXct,as.POSIXlt.Date,as.POSIXlt,as.POSIXct.numeric,as.POSIXct.default,%
  < as.POSIXct.dates,as.POSIXct.date,as.POSIXct.POSIXlt,as.POSIXct.Date,as.POSIXct,%
  < as.Date.numeric,as.Date.factor,as.Date.default,as.Date.dates,as.Date.date,%
  < as.Date.character,as.Date.POSIXlt,as.Date.POSIXct,as.Date,arrayInd,%
  < aperm.table,aperm.default,anyDuplicated.matrix,anyDuplicated.default,anyDuplicated.data.frame,%
  ---
  > getCConverterStatus,getCConverterDescriptions,getAllConnections,gc.time,formatDL,%
  > format.pval,format.octmode,format.numeric_version,format.info,format.hexmode,%
  > format.factor,format.difftime,format.default,format.data.frame,format.char,%
  > format.POSIXlt,format.POSIXct,format.Date,format.AsIs,formals<-,%
  > force,flush.connection,flush,findRestart,findPackageEnv,%
  > findInterval,file.symlink,file.show,file.rename,file.remove,%
  > file.path,file.info,file.exists,file.create,file.copy,%
  > file.choose,file.append,file.access,fifo,factorial,%
  > expm1,expand.grid,eval.parent,environmentName,environmentIsLocked,%
  > environment<-,env.profile,enquote,encodeString,enc2utf8,%
  > enc2native,emptyenv,eapply,dyn.unload,dyn.load,%
  > duplicated.numeric_version,duplicated.matrix,duplicated.default,duplicated.data.frame,duplicated.array,%
  > duplicated.POSIXlt,droplevels.factor,droplevels.data.frame,droplevels,do.call,%
  > dir.create,dimnames<-.data.frame,dimnames<-,dimnames.data.frame,dim<-,%
  > dim.data.frame,difftime,diff.default,diff.POSIXt,diff.Date,%
  > diag<-,determinant.matrix,determinant,det,delayedAssign,%
  > default.stringsAsFactors,debugonce,data.matrix,data.frame,data.class,%
  > dQuote,cut.default,cut.POSIXt,cut.Date,contributors,%
  > conditionMessage.condition,conditionMessage,conditionCall.condition,conditionCall,computeRestarts,%
  > comment<-,colnames<-,colSums,colMeans,codes<-,%
  > codes.ordered,codes.factor,closeAllConnections,close.srcfile,close.connection,%
  > class<-,chol.default,check_tzones,chartr,charToRaw,%
  > char.expand,cbind.data.frame,casefold,capabilities,callCC,%
  > c.numeric_version,c.noquote,c.POSIXlt,c.POSIXct,c.Date,%
  > bzfile,by.default,by.data.frame,browserText,browserSetDebug,%
  > browserCondition,bquote,body<-,bindtextdomain,bindingIsLocked,%
  > bindingIsActive,baseenv,attributes<-,attr<-,attr.all.equal,%
  > attachNamespace,assign,asS4,asS3,asNamespace,%
  > as.vector.factor,as.vector,as.table.default,as.table,as.symbol,%
  > as.single.default,as.single,as.real,as.raw,as.qr,%
  > as.pairlist,as.package_version,as.ordered,as.octmode,as.numeric_version,%
  > as.numeric,as.null.default,as.null,as.name,as.matrix.noquote,%
  > as.matrix.default,as.matrix.data.frame,as.matrix.POSIXlt,as.matrix,as.logical.factor,%
  > as.logical,as.list.numeric_version,as.list.function,as.list.factor,as.list.environment,%
  > as.list.default,as.list.data.frame,as.list.POSIXct,as.list.Date,as.list,%
  > as.integer,as.hexmode,as.function.default,as.function,as.factor,%
  > as.expression.default,as.expression,as.environment,as.double.difftime,as.double.POSIXlt,%
  > as.double,as.difftime,as.data.frame.vector,as.data.frame.ts,as.data.frame.table,%
  > as.data.frame.raw,as.data.frame.ordered,as.data.frame.numeric_version,as.data.frame.numeric,as.data.frame.model.matrix,%
  > as.data.frame.matrix,as.data.frame.logical,as.data.frame.list,as.data.frame.integer,as.data.frame.factor,%
  > as.data.frame.difftime,as.data.frame.default,as.data.frame.data.frame,as.data.frame.complex,as.data.frame.character,%
  > as.data.frame.array,as.data.frame.POSIXlt,as.data.frame.POSIXct,as.data.frame.Date,as.data.frame.AsIs,%
  > as.data.frame,as.complex,as.character.srcref,as.character.octmode,as.character.numeric_version,%
  > as.character.hexmode,as.character.factor,as.character.error,as.character.default,as.character.condition,%
  > as.character.POSIXt,as.character.Date,as.character,as.call,as.array.default,%
  > as.array,as.POSIXlt.numeric,as.POSIXlt.factor,as.POSIXlt.default,as.POSIXlt.dates,%
  > as.POSIXlt.date,as.POSIXlt.character,as.POSIXlt.POSIXct,as.POSIXlt.Date,as.POSIXlt,%
  > as.POSIXct.numeric,as.POSIXct.default,as.POSIXct.dates,as.POSIXct.date,as.POSIXct.POSIXlt,%
  > as.POSIXct.Date,as.POSIXct,as.Date.numeric,as.Date.factor,as.Date.default,%
  > as.Date.dates,as.Date.date,as.Date.character,as.Date.POSIXlt,as.Date.POSIXct,%
  > as.Date,arrayInd,anyDuplicated.matrix,anyDuplicated.default,anyDuplicated.data.frame,%
  809,817c804,812
  < Sys.chmod,Sys.Date,Summary.ordered,Summary.numeric_version,Summary.factor,%
  < Summary.difftime,Summary.data.frame,Summary.POSIXlt,Summary.POSIXct,Summary.Date,%
  < Reduce,R_system_version,RNGversion,R.version.string,R.version,%
  < R.home,R.Version,Position,Ops.ordered,Ops.numeric_version,%
  < Ops.factor,Ops.difftime,Ops.data.frame,Ops.POSIXt,Ops.Date,%
  < Negate,Math.factor,Math.difftime,Math.data.frame,Math.POSIXt,%
  < Math.Date,Map,La.svd,La.eigen,La.chol2inv,%
  < La.chol,LETTERS,ISOdatetime,ISOdate,Find,%
  < Filter,F,Encoding<-,Encoding,Cstack_info%
  ---
  > Sys.chmod,Sys.Date,Summary.numeric_version,Summary.factor,Summary.difftime,%
  > Summary.data.frame,Summary.POSIXlt,Summary.POSIXct,Summary.Date,Reduce,%
  > R_system_version,RNGversion,R.version.string,R.version,R.home,%
  > R.Version,Position,Ops.ordered,Ops.numeric_version,Ops.factor,%
  > Ops.difftime,Ops.data.frame,Ops.POSIXt,Ops.Date,Negate,%
  > Math.factor,Math.difftime,Math.data.frame,Math.POSIXt,Math.Date,%
  > Map,La.svd,La.eigen,La.chol2inv,La.chol,%
  > LETTERS,ISOdatetime,ISOdate,Find,Filter,%
  > F,Encoding<-,Encoding,Cstack_info%
  1038c1033
  < [3] "## require(\"methods\", character = TRUE, quietly = TRUE)"
  ---
  > [3] " require(\"methods\", character = TRUE, quietly = TRUE)"
  1373a1369
  > Warning: closing unused connection 3 (http://r-forge.r-project.org/scm/viewvc.php/*checkout*/pkg/distr/R/AllClasses.R?root=distr)
  1379,1393c1375,1389
  < morekeywords={[12]veteran,untangle.specials,tt,tobin,tcut,%
  < survregDtest,survreg.fit,survreg.distributions,survreg.control,survreg,%
  < survobrien,survfitcoxph.fit,survfit,survexp.usr,survexp.us,%
  < survexp.mn,survexp,survdiff,survSplit,survConcordance,%
  < strata,stanford2,ridge,rats,ratetableDate,%
  < ratetable,qsurvreg,pyears,psurvreg,pspline,%
  < pbcseq,pbc,ovarian,nwtco,mgus2,%
  < mgus1,mgus,match.ratetable,lung,leukemia,%
  < labels.survreg,kidney,jasa1,jasa,is.ratetable,%
  < is.na.ratetable,is.na.coxph.penalty,is.na.Surv,is.Surv,heart,%
  < frailty.t,frailty.gaussian,frailty.gamma,frailty,format.Surv,%
  < dsurvreg,coxph.fit,coxph.detail,coxph.control,coxph,%
  < cox.zph,colon,cluster,clogit,cgd,%
  < cch,cancer,bladder2,bladder1,bladder,%
  < basehaz,attrassign,aml,aareg,Surv%
  ---
  > morekeywords={[12]veteran,untangle.specials,tobin,tcut,survregDtest,%
  > survreg.fit,survreg.distributions,survreg.control,survreg,survobrien,%
  > survfit,survexp.usr,survexp.us,survexp.mnwhite,survexp.mn,%
  > survexp,survdiff,survSplit,survConcordance,strata,%
  > stanford2,ridge,rats,ratetable,qsurvreg,%
  > pyears,psurvreg,pspline,pbcseq,pbc,%
  > ovarian,nwtco,mgus2,mgus1,mgus,%
  > match.ratetable,lung,leukemia,labels.survreg,kidney,%
  > jasa1,jasa,is.ratetable,is.na.ratetable,is.na.coxph.penalty,%
  > is.na.Surv,is.Surv,heart,frailty.t,frailty.gaussian,%
  > frailty.gamma,frailty,format.Surv,dsurvreg,coxph.fit,%
  > coxph.detail,coxph.control,coxph,cox.zph,colon,%
  > cluster,clogit,cgd,cch,cancer,%
  > bladder2,bladder1,bladder,basehaz,attrassign,%
  > aml,aareg,Surv%
  2050a2047,2048
  > Warning: closing unused connection 4 (http://r-forge.r-project.org/scm/viewvc.php/*checkout*/pkg/distr/R/BinomialDistribution.R?root=distr)
  > Warning: closing unused connection 3 (http://r-forge.r-project.org/scm/viewvc.php/*checkout*/pkg/distr/man/Binom-class.Rd?root=distr)
  2052c2050
  < [1,] "2.3.2"
  ---
  > [1,] "2.3"
  2073c2071
  < [4] "## require(\"methods\", character = TRUE, quietly = TRUE)"
  ---
  > [4] " require(\"methods\", character = TRUE, quietly = TRUE)"
  2794c2792
  < [725] " log = log)"
  ---
  > [725] " lower.tail = lower.tail, log.p = log.p)"
  OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignettes ... OK
• checking PDF version of manual ... OK
  WARNING: There was 1 warning, see
  '/Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.13/SweaveListingUtils.Rcheck/00check.log'
  for details
• elapsed time (check, wall clock): 0:36