• using R version 2.13.0 Patched (2011-05-24 r55982)
• using platform: i386-apple-darwin9.8.0 (32-bit)
• using session charset: ASCII
• checking for file 'Geneland/DESCRIPTION' ... OK
• this is package 'Geneland' version '3.3.0'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'Geneland' can be installed ... OK
• checking installed package size ... NOTE
  installed size is 5.6Mb
  sub-directories of 1Mb or more:
  doc 2.9Mb
  libs 2.2Mb
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
• loading checks for arch 'x86_64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  Geneland.GUI : run : RunmcmcFmodel: no visible binding for '<<-'
  assignment to 'probs'
  Geneland.GUI : run : RunmcmcFmodel: no visible binding for '<<-'
  assignment to 'pops'
  Geneland.GUI : run : RunmcmcFmodel: no visible binding for '<<-'
  assignment to 'runs'
  Geneland.GUI : run : RunmcmcFmodel : Sort: no visible binding for
  global variable 'probs'
  Geneland.GUI : run : RunmcmcFmodel : Sort: no visible binding for
  global variable 'pops'
  Geneland.GUI : run : RunmcmcFmodel : Sort: no visible binding for
  global variable 'runs'
  Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  '<<-' assignment to 'probs'
  Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  '<<-' assignment to 'pops'
  Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  '<<-' assignment to 'runs'
  Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  global variable 'runs'
  Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  global variable 'pops'
  Geneland.GUI : run : RunmcmcFmodel : Reburn: no visible binding for
  global variable 'probs'
  Geneland.GUI : run : RunmcmcFmodel : Output: no visible binding for
  global variable 'runs'
  Geneland.GUI : run : RunmcmcFmodel : mr: no visible binding for '<<-'
  assignment to 'pops'
  Geneland.GUI : run : RunmcmcFmodel : mr: no visible binding for global
  variable 'pops'
  Geneland.GUI : run : RunmcmcFmodel : mr: no visible binding for '<<-'
  assignment to 'probs'
  Geneland.GUI : run : RunmcmcFmodel : mr: no visible binding for global
  variable 'probs'
  Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  '<<-' assignment to 'runs'
  Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  global variable 'runs'
  Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  '<<-' assignment to 'pops'
  Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  global variable 'pops'
  Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  '<<-' assignment to 'probs'
  Geneland.GUI : run : RunmcmcFmodel : mrafter: no visible binding for
  global variable 'probs'
  Geneland.GUI : plot : EHybZon : DrawHib: no visible global function
  definition for 'matrix2string'
  Geneland.GUI : SimnonIBD : runnonibd: no visible binding for '<<-'
  assignment to 'globaldiploidgenotypes'
  Geneland.GUI : Convert : gltgp: no visible binding for global variable
  'globaldiploidgenotypes'
  Geneland.GUI : SimIBD : runibd: no visible binding for '<<-' assignment
  to 'globaldiploidgenotypes'
  Geneland.GUI : Nullify : gltgp: no visible binding for global variable
  'globaldiploidgenotypes'
  Geneland.GUI : Nullify : gltgp: no visible binding for '<<-' assignment
  to 'globaldiploidgenotypes'
• checking Rd files ... NOTE
  prepare_Rd: Fstat.Rd:45: Dropping empty section \keyword
  prepare_Rd: Fstat.output.Rd:37: Dropping empty section \keyword
  prepare_Rd: Geneland-package.Rd:55: Dropping empty section \keyword
  prepare_Rd: Geneland-package.Rd:57: Dropping empty section \seealso
  prepare_Rd: Geneland-package.Rd:59: Dropping empty section \examples
  prepare_Rd: Geneland.GUI.Rd:24: Dropping empty section \keyword
  prepare_Rd: Geneland.GUI.Rd:15: Dropping empty section \details
  prepare_Rd: Geneland.GUI.Rd:16: Dropping empty section \value
  prepare_Rd: Geneland.GUI.Rd:19: Dropping empty section \note
  prepare_Rd: Geneland.GUI.Rd:17: Dropping empty section \references
  prepare_Rd: Geneland.GUI.Rd:20: Dropping empty section \seealso
  prepare_Rd: PlotDrift.Rd:22: Dropping empty section \keyword
  prepare_Rd: PlotFreq.Rd:33: Dropping empty section \keyword
  prepare_Rd: PlotFreqA.Rd:28: Dropping empty section \keyword
  prepare_Rd: PlotTessDyn.Rd:22: Dropping empty section \keyword
  prepare_Rd: PlotTessellation.Rd:26: Dropping empty section \keyword
  prepare_Rd: Plotnpop.Rd:29: Dropping empty section \keyword
  prepare_Rd: Plotntile.Rd:24: Dropping empty section \keyword
  prepare_Rd: PostProcessChain.Rd:82: Dropping empty section \keyword
  prepare_Rd: PostProcessMultChain.Rd:81: Dropping empty section \keyword
  prepare_Rd: PosteriorMode.Rd:36: Dropping empty section \keyword
  prepare_Rd: genotypes.Rd:14: Dropping empty section \keyword
  prepare_Rd: genotypes.Rd:8: Dropping empty section \usage
  prepare_Rd: genotypes.Rd:11: Dropping empty section \author
  prepare_Rd: genotypes.Rd:12: Dropping empty section \references
  prepare_Rd: gl2gp.Rd:24: Dropping empty section \keyword
  prepare_Rd: nullify.Rd:25: Dropping empty section \keyword
  prepare_Rd: nullify.Rd:20: Dropping empty section \references
  prepare_Rd: nullify.Rd:23: Dropping empty section \examples
  prepare_Rd: show.simdata.Rd:59: Dropping empty section \keyword
  prepare_Rd: show.simdata.Rd:49-51: Dropping empty section \details
  prepare_Rd: show.simdata.Rd:57: Dropping empty section \note
  prepare_Rd: show.simdata.Rd:58: Dropping empty section \examples
  prepare_Rd: simFmodel.Rd:78: Dropping empty section \keyword
  prepare_Rd: simdata.Rd:181: Dropping empty section \keyword
  prepare_Rd: simdata.Rd:156: Dropping empty section \note
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking sizes of PDF files under inst/doc ... OK
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x86_64' ... OK
• checking PDF version of manual ... OK
• elapsed time (check, wall clock): 1:36