• using R version 2.13.0 Patched (2011-05-22 r55974)
• using platform: i386-apple-darwin9.8.0 (32-bit)
• using session charset: ASCII
• checking for file 'FunNet/DESCRIPTION' ... OK
• this is package 'FunNet' version '1.00-12'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'FunNet' can be installed ... OK
• checking installed package size ... NOTE
  installed size is 6.5Mb
  sub-directories of 1Mb or more:
  data 1.4Mb
  R 5.0Mb
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  Found possibly global 'T' or 'F' in the following functions:
  .PickHardThreshold .PickSoftThreshold .ScaleFreePlot
  .SoftConnectivity .central.plot.one .central.plot.two .clusters.plot
  .cytoscape.one .cytoscape.two .dynamic.proximity .main.loop .pcor.mat
  .pcor.rec .pcor.test .profil.plot.one .profil.plot.two
  .write.cyto.attr FunNet
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking examples ... OK
• checking PDF version of manual ... OK
• elapsed time (check, wall clock): 2:33