Check results for 'DoE.wrapper'

using R version 2.14.0 (2011-10-31)
using platform: i386-apple-darwin9.8.0 (32-bit)
using session charset: ASCII
checking for file 'DoE.wrapper/DESCRIPTION' ... OK
this is package 'DoE.wrapper' version '0.8-6'
package encoding: latin1
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking whether package 'DoE.wrapper' can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... OK
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking examples ... WARNING
checking a package with encoding 'latin1' in an ASCII locale

OK
checking for unstated dependencies in tests ... OK
checking tests ... OK
Running 'Dopt.test.R'
Comparing 'Dopt.test.Rout' to 'Dopt.test.Rout.save' ...8d7
< The following object(s) are masked from 'package:conf.design':
10,12c9
< factorize.factor
<
< The following object(s) are masked from 'package:relimp':
---
> The following object(s) are masked from package:relimp :
16d12
< The following object(s) are masked from 'package:stats':
18c14,17
< aov, lm
---
> The following object(s) are masked from package:stats :
>
> lm
>
20c19
< The following object(s) are masked from 'package:graphics':
---
> The following object(s) are masked from package:graphics :
24c23,24
< The following object(s) are masked from 'package:utils':
---
>
> The following object(s) are masked from package:utils :
31c31,32
< The following object(s) are masked from 'package:BsMD':
---
>
> The following object(s) are masked from package:BsMD :
295c296
< -1.3672 -0.3520 -0.0098 0.2658 1.7043
---
> -1.367240 -0.352000 -0.009798 0.265763 1.704312
743,746d743
< WARNING: This is a split plot design, whole plot effects may have larger variance!
< p-values for whole plot effects may be misleadingly low!
< The whole plot effects are:
< [1] semester reader
Running 'bbd.test.R'
Comparing 'bbd.test.Rout' to 'bbd.test.Rout.save' ...8,11d7
< The following object(s) are masked from 'package:conf.design':
<
< factorize.factor
<
34a31,32
> Warning message:
> package 'rsm' was built under R version 2.11.1
Running 'ccd.augment.test.R'
Comparing 'ccd.augment.test.Rout' to 'ccd.augment.test.Rout.save' ...8d7
< The following object(s) are masked from 'package:conf.design':
10,20c9
< factorize.factor
<
< The following object(s) are masked from 'package:relimp':
<
< showData
<
< The following object(s) are masked from 'package:stats':
<
< aov, lm
<
< The following object(s) are masked from 'package:graphics':
---
> The following object(s) are masked from package:graphics :
24c13,14
< The following object(s) are masked from 'package:utils':
---
>
> The following object(s) are masked from package:utils :
31c21,22
< The following object(s) are masked from 'package:BsMD':
---
>
> The following object(s) are masked from package:BsMD :
63,70c54,55
< Warning messages:
< 1: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 2: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 3: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 4: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 5: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 6: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 7: In ccd(k, generators = generators, blocks = block.name, n0 = ncenter, :
---
> Warning message:
> In ccd(k, generators = generators, blocks = block.name, n0 = ncenter, :
73d57
< creating full factorial with 8 runs ...
98,104d81
< Warning messages:
< 1: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 2: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 3: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 4: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 5: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 6: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
108,114d84
< Warning messages:
< 1: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 2: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 3: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 4: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 5: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 6: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
197d166
< There were 12 warnings (use warnings() to see them)
231d199
< There were 12 warnings (use warnings() to see them)
268d235
< There were 12 warnings (use warnings() to see them)
271d237
< There were 12 warnings (use warnings() to see them)
342d307
< There were 12 warnings (use warnings() to see them)
350d314
< There were 12 warnings (use warnings() to see them)
395,432c359,396
< C1.1 39 C1.1 1 30.00000 24.00000 100.0000 30.00000
< C1.2 40 C1.2 1 50.00000 24.00000 100.0000 30.00000
< C1.3 41 C1.3 1 30.00000 24.00000 100.0000 75.00000
< C1.4 42 C1.4 1 50.00000 24.00000 100.0000 75.00000
< C1.5 43 C1.5 1 30.00000 24.00000 100.0000 30.00000
< C1.6 44 C1.6 1 50.00000 24.00000 100.0000 30.00000
< C1.7 45 C1.7 1 30.00000 24.00000 100.0000 75.00000
< C1.8 46 C1.8 1 50.00000 24.00000 100.0000 75.00000
< C1.9 47 C1.9 1 30.00000 26.00000 100.0000 30.00000
< C1.10 48 C1.10 1 50.00000 26.00000 100.0000 30.00000
< C1.11 49 C1.11 1 30.00000 26.00000 100.0000 75.00000
< C1.12 50 C1.12 1 50.00000 26.00000 100.0000 75.00000
< C1.13 51 C1.13 1 30.00000 26.00000 100.0000 30.00000
< C1.14 52 C1.14 1 50.00000 26.00000 100.0000 30.00000
< C1.15 53 C1.15 1 30.00000 26.00000 100.0000 75.00000
< C1.16 54 C1.16 1 50.00000 26.00000 100.0000 75.00000
< C1.17 55 C1.17 1 30.00000 24.00000 400.0000 30.00000
< C1.18 56 C1.18 1 50.00000 24.00000 400.0000 30.00000
< C1.19 57 C1.19 1 30.00000 24.00000 400.0000 75.00000
< C1.20 58 C1.20 1 50.00000 24.00000 400.0000 75.00000
< C1.21 59 C1.21 1 30.00000 24.00000 400.0000 30.00000
< C1.22 60 C1.22 1 50.00000 24.00000 400.0000 30.00000
< C1.23 61 C1.23 1 30.00000 24.00000 400.0000 75.00000
< C1.24 62 C1.24 1 50.00000 24.00000 400.0000 75.00000
< C1.25 63 C1.25 1 30.00000 26.00000 400.0000 30.00000
< C1.26 64 C1.26 1 50.00000 26.00000 400.0000 30.00000
< C1.27 65 C1.27 1 30.00000 26.00000 400.0000 75.00000
< C1.28 66 C1.28 1 50.00000 26.00000 400.0000 75.00000
< C1.29 67 C1.29 1 30.00000 26.00000 400.0000 30.00000
< C1.30 68 C1.30 1 50.00000 26.00000 400.0000 30.00000
< C1.31 69 C1.31 1 30.00000 26.00000 400.0000 75.00000
< C1.32 70 C1.32 1 50.00000 26.00000 400.0000 75.00000
< C1.33 71 C1.33 1 40.00000 25.00000 250.0000 52.50000
< C1.34 72 C1.34 1 40.00000 25.00000 250.0000 52.50000
< C1.35 73 C1.35 1 40.00000 25.00000 250.0000 52.50000
< C1.36 74 C1.36 1 40.00000 25.00000 250.0000 52.50000
< C1.37 75 C1.37 1 40.00000 25.00000 250.0000 52.50000
< C1.38 76 C1.38 1 40.00000 25.00000 250.0000 52.50000
---
> C1.1 39 C1.39 1 30.00000 24.00000 100.0000 30.00000
> C1.2 40 C1.40 1 50.00000 24.00000 100.0000 30.00000
> C1.3 41 C1.41 1 30.00000 24.00000 100.0000 75.00000
> C1.4 42 C1.42 1 50.00000 24.00000 100.0000 75.00000
> C1.5 43 C1.43 1 30.00000 24.00000 100.0000 30.00000
> C1.6 44 C1.44 1 50.00000 24.00000 100.0000 30.00000
> C1.7 45 C1.45 1 30.00000 24.00000 100.0000 75.00000
> C1.8 46 C1.46 1 50.00000 24.00000 100.0000 75.00000
> C1.9 47 C1.47 1 30.00000 26.00000 100.0000 30.00000
> C1.10 48 C1.48 1 50.00000 26.00000 100.0000 30.00000
> C1.11 49 C1.49 1 30.00000 26.00000 100.0000 75.00000
> C1.12 50 C1.50 1 50.00000 26.00000 100.0000 75.00000
> C1.13 51 C1.51 1 30.00000 26.00000 100.0000 30.00000
> C1.14 52 C1.52 1 50.00000 26.00000 100.0000 30.00000
> C1.15 53 C1.53 1 30.00000 26.00000 100.0000 75.00000
> C1.16 54 C1.54 1 50.00000 26.00000 100.0000 75.00000
> C1.17 55 C1.55 1 30.00000 24.00000 400.0000 30.00000
> C1.18 56 C1.56 1 50.00000 24.00000 400.0000 30.00000
> C1.19 57 C1.57 1 30.00000 24.00000 400.0000 75.00000
> C1.20 58 C1.58 1 50.00000 24.00000 400.0000 75.00000
> C1.21 59 C1.59 1 30.00000 24.00000 400.0000 30.00000
> C1.22 60 C1.60 1 50.00000 24.00000 400.0000 30.00000
> C1.23 61 C1.61 1 30.00000 24.00000 400.0000 75.00000
> C1.24 62 C1.62 1 50.00000 24.00000 400.0000 75.00000
> C1.25 63 C1.63 1 30.00000 26.00000 400.0000 30.00000
> C1.26 64 C1.64 1 50.00000 26.00000 400.0000 30.00000
> C1.27 65 C1.65 1 30.00000 26.00000 400.0000 75.00000
> C1.28 66 C1.66 1 50.00000 26.00000 400.0000 75.00000
> C1.29 67 C1.67 1 30.00000 26.00000 400.0000 30.00000
> C1.30 68 C1.68 1 50.00000 26.00000 400.0000 30.00000
> C1.31 69 C1.69 1 30.00000 26.00000 400.0000 75.00000
> C1.32 70 C1.70 1 50.00000 26.00000 400.0000 75.00000
> C1.33 71 C1.71 1 40.00000 25.00000 250.0000 52.50000
> C1.34 72 C1.72 1 40.00000 25.00000 250.0000 52.50000
> C1.35 73 C1.73 1 40.00000 25.00000 250.0000 52.50000
> C1.36 74 C1.74 1 40.00000 25.00000 250.0000 52.50000
> C1.37 75 C1.75 1 40.00000 25.00000 250.0000 52.50000
> C1.38 76 C1.76 1 40.00000 25.00000 250.0000 52.50000
830,836d793
< Warning messages:
< 1: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 2: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 3: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 4: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 5: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 6: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
864,870d820
< Warning messages:
< 1: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 2: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 3: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 4: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 5: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 6: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
874,880d823
< Warning messages:
< 1: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 2: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 3: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 4: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 5: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 6: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
882,889c825,826
< Warning messages:
< 1: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 2: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 3: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 4: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 5: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 6: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 7: In ccd(k, generators = generators, blocks = as.formula(paste(block.name, :
---
> Warning message:
> In ccd(k, generators = generators, blocks = as.formula(paste(block.name, :
894,895c831,832
< Warning messages:
< 1: In FrF2(64, gen = c(7, 11, 14), blocks = 16, alias.block.2fis = TRUE, :
---
> Warning message:
> In FrF2(64, gen = c(7, 11, 14), blocks = 16, alias.block.2fis = TRUE, :
898,903d834
< 2: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 3: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 4: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 5: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 6: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 7: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
912,918d842
< Warning messages:
< 1: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 2: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 3: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 4: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 5: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 6: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
Running 'qua.design.test.R'
Comparing 'qua.design.test.Rout' to 'qua.design.test.Rout.save' ...8d7
< The following object(s) are masked from 'package:conf.design':
10,12c9
< factorize.factor
<
< The following object(s) are masked from 'package:relimp':
---
> The following object(s) are masked from package:relimp :
16d12
< The following object(s) are masked from 'package:stats':
18c14,17
< aov, lm
---
> The following object(s) are masked from package:stats :
>
> lm
>
20c19
< The following object(s) are masked from 'package:graphics':
---
> The following object(s) are masked from package:graphics :
24c23,24
< The following object(s) are masked from 'package:utils':
---
>
> The following object(s) are masked from package:utils :
31c31,32
< The following object(s) are masked from 'package:BsMD':
---
>
> The following object(s) are masked from package:BsMD :
65,67c66
< lm.default(formula = y ~ ., data = qua.design(plan, quantitative = "none",
< contrasts = c(A = "contr.treatment", B = "contr.treatment",
< C = "contr.treatment")))
---
> lm.default(formula = y ~ ., data = qua.design(plan, quantitative = "none", contrasts = c(A = "contr.treatment", B = "contr.treatment", C = "contr.treatment")))
107,109c106
< lm.default(formula = y ~ ., data = qua.design(plan, quantitative = "none",
< contrasts = c(X1 = "contr.treatment", X2 = "contr.treatment",
< X3 = "contr.treatment", X4 = "contr.helmert")))
---
> lm.default(formula = y ~ ., data = qua.design(plan, quantitative = "none", contrasts = c(X1 = "contr.treatment", X2 = "contr.treatment", X3 = "contr.treatment", X4 = "contr.helmert")))
121,127d117
< Warning messages:
< 1: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 2: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 3: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 4: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 5: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
< 6: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
152,154c142
< lm.default(formula = y ~ ., data = qua.design(plan, quantitative = "none",
< contrasts = c(A = "contr.treatment", B = "contr.treatment",
< C = "contr.treatment", D = "contr.helmert")))
---
> lm.default(formula = y ~ ., data = qua.design(plan, quantitative = "none", contrasts = c(A = "contr.treatment", B = "contr.treatment", C = "contr.treatment", D = "contr.helmert")))
185,187c173
< lm.default(formula = y ~ ., data = qua.design(plan, quantitative = "none",
< contrasts = c(A = "contr.treatment", B = "contr.treatment",
< C = "contr.treatment", D = "contr.helmert")))
---
> lm.default(formula = y ~ ., data = qua.design(plan, quantitative = "none", contrasts = c(A = "contr.treatment", B = "contr.treatment", C = "contr.treatment", D = "contr.helmert")))
checking PDF version of manual ... OK
WARNING: There was 1 warning, see
'/Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.14/DoE.wrapper.Rcheck/00check.log'
for details
elapsed time (check, wall clock): 1:03