- using R version 2.14.0 (2011-10-31)
- using platform: i386-apple-darwin9.8.0 (32-bit)
- using session charset: ASCII
- checking for file 'BMS/DESCRIPTION' ... OK
- checking extension type ... Package
- this is package 'BMS' version '0.3.0'
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
- checking for executable files ... OK
- checking whether package 'BMS' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
.addup.enum: no visible binding for global variable 'pmpold'
.addup.enum: no visible binding for global variable 'lprobold'
.addup.enum: no visible binding for global variable 'null.lik'
.addup.enum: no visible binding for '<<-' assignment to 'inccount'
.addup.enum: no visible binding for global variable 'inccount'
.addup.enum: no visible binding for global variable 'molddraw'
.addup.enum: no visible binding for '<<-' assignment to 'msize'
.addup.enum: no visible binding for global variable 'msize'
.addup.enum: no visible binding for global variable 'kold'
.addup.enum: no visible binding for '<<-' assignment to 'cumsumweights'
.addup.enum: no visible binding for global variable 'cumsumweights'
.addup.enum: no visible binding for global variable 'position'
.addup.enum: no visible binding for global variable 'K'
.addup.enum: no visible binding for global variable 'b1'
.addup.enum: no visible binding for global variable 'b2'
.addup.enum: no visible binding for '<<-' assignment to 'bmo'
.addup.enum: no visible binding for global variable 'bmo'
.addup.enum: no visible binding for '<<-' assignment to 'null.count'
.addup.enum: no visible binding for global variable 'null.count'
.addup.enum.wotherstats: no visible binding for global variable
'pmpold'
.addup.enum.wotherstats: no visible binding for global variable
'lprobold'
.addup.enum.wotherstats: no visible binding for global variable
'null.lik'
.addup.enum.wotherstats: no visible binding for '<<-' assignment to
'inccount'
.addup.enum.wotherstats: no visible binding for global variable
'inccount'
.addup.enum.wotherstats: no visible binding for global variable
'molddraw'
.addup.enum.wotherstats: no visible binding for '<<-' assignment to
'msize'
.addup.enum.wotherstats: no visible binding for global variable 'msize'
.addup.enum.wotherstats: no visible binding for global variable 'kold'
.addup.enum.wotherstats: no visible binding for '<<-' assignment to
'cumsumweights'
.addup.enum.wotherstats: no visible binding for global variable
'cumsumweights'
.addup.enum.wotherstats: no visible binding for global variable
'position'
.addup.enum.wotherstats: no visible binding for global variable 'K'
.addup.enum.wotherstats: no visible binding for global variable 'b1'
.addup.enum.wotherstats: no visible binding for global variable 'b2'
.addup.enum.wotherstats: no visible binding for '<<-' assignment to
'bmo'
.addup.enum.wotherstats: no visible binding for global variable 'bmo'
.addup.enum.wotherstats: no visible binding for '<<-' assignment to
'null.count'
.addup.enum.wotherstats: no visible binding for global variable
'null.count'
.addup.enum.wotherstats: no visible binding for '<<-' assignment to
'otherstats'
.addup.enum.wotherstats: no visible binding for global variable
'lik.list'
.addup.enum.wotherstats: no visible binding for '<<-' assignment to
'add.otherstats'
.addup.enum.wotherstats: no visible binding for global variable
'add.otherstats'
.addup.enum.wotherstats: no visible binding for global variable
'otherstats'
.addup.mcmc: no visible binding for '<<-' assignment to 'inccount'
.addup.mcmc: no visible binding for global variable 'inccount'
.addup.mcmc: no visible binding for global variable 'molddraw'
.addup.mcmc: no visible binding for '<<-' assignment to 'msize'
.addup.mcmc: no visible binding for global variable 'msize'
.addup.mcmc: no visible binding for global variable 'kold'
.addup.mcmc: no visible binding for global variable 'position'
.addup.mcmc: no visible binding for global variable 'K'
.addup.mcmc: no visible binding for global variable 'b1'
.addup.mcmc: no visible binding for global variable 'b2'
.addup.mcmc: no visible binding for '<<-' assignment to 'bmo'
.addup.mcmc: no visible binding for global variable 'bmo'
.addup.mcmc: no visible binding for '<<-' assignment to 'null.count'
.addup.mcmc: no visible binding for global variable 'null.count'
.addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
'inccount'
.addup.mcmc.wotherstats: no visible binding for global variable
'inccount'
.addup.mcmc.wotherstats: no visible binding for global variable
'molddraw'
.addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
'msize'
.addup.mcmc.wotherstats: no visible binding for global variable 'msize'
.addup.mcmc.wotherstats: no visible binding for global variable 'kold'
.addup.mcmc.wotherstats: no visible binding for global variable
'position'
.addup.mcmc.wotherstats: no visible binding for global variable 'K'
.addup.mcmc.wotherstats: no visible binding for global variable 'b1'
.addup.mcmc.wotherstats: no visible binding for global variable 'b2'
.addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
'bmo'
.addup.mcmc.wotherstats: no visible binding for global variable 'bmo'
.addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
'null.count'
.addup.mcmc.wotherstats: no visible binding for global variable
'null.count'
.addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
'otherstats'
.addup.mcmc.wotherstats: no visible binding for global variable
'lik.list'
.addup.mcmc.wotherstats: no visible binding for '<<-' assignment to
'add.otherstats'
.addup.mcmc.wotherstats: no visible binding for global variable
'add.otherstats'
.addup.mcmc.wotherstats: no visible binding for global variable
'otherstats'
pred.density : calc_alldens: no visible binding for '<<-' assignment to
'xf_index'
pred.density : calc_alldens : <anonymous>: no visible binding for
global variable 'xf_index'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking for left-overs from vignette generation ... NOTE
file 'inst/doc/Rplots.ps' will not be installed: please remove it
- checking sizes of PDF files under 'inst/doc' ... NOTE
'qpdf' made some significant size reductions:
compacted 'bms.pdf' from 978Kb to 359Kb
consider running tools::compactPDF() on these files
- checking examples ... WARNING
Found the following significant warnings:
Warning: sd(<data.frame>) is deprecated.
Warning: sd(<data.frame>) is deprecated.
Warning: sd(<data.frame>) is deprecated.
Warning: sd(<data.frame>) is deprecated.
Warning: sd(<data.frame>) is deprecated.
Warning: sd(<data.frame>) is deprecated.
Warning: sd(<data.frame>) is deprecated.
Warning: sd(<data.frame>) is deprecated.
Warning: sd(<data.frame>) is deprecated.
Deprecated functions may be defunct as soon as of the next release of
R.
See ?Deprecated.
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in 'inst/doc' ... OK
- checking running R code from vignettes ... OK
- checking re-building of vignette PDFs ... OK
- checking PDF version of manual ... OK
WARNING: There was 1 warning, see
'/Volumes/Tiger/Builds/Rdev-web/QA/Simon/packages/leopard-universal/results/2.14/BMS.Rcheck/00check.log'
for details
- elapsed time (check, wall clock): 7:41