* installing *source* package ‘sspse’ ... ** package ‘sspse’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cmp.c -o cmp.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dis.c -o dis.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dpoilog.c -o dpoilog.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c getinclC.c -o getinclC.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c getinclCstacked.c -o getinclCstacked.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c likelihoodcmp.c -o likelihoodcmp.o dis.c:30:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; ^ dis.c:30:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; ^ dis.c:30:55: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; ^ dis.c:30:68: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; ^ likelihoodcmp.c:33:10: warning: variable 'dkappa' set but not used [-Wunused-but-set-variable] double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal; ^ likelihoodcmp.c:33:18: warning: variable 'ddf' set but not used [-Wunused-but-set-variable] double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal; ^ likelihoodcmp.c:33:36: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable] double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal; ^ likelihoodcmp.c:33:49: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable] double dkappa, ddf, dmu, dsigma, dmuproposal, dsigmaproposal; ^ likelihoodcmp.c:271:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable] int i, Ki, Ni, isamp, iinterval, isamplesize, iburnin; ^ likelihoodcmp.c:277:18: warning: variable 'rkappa' set but not used [-Wunused-but-set-variable] double dkappa, rkappa, ddf, dmu; ^ likelihoodcmp.c:277:26: warning: variable 'ddf' set but not used [-Wunused-but-set-variable] double dkappa, rkappa, ddf, dmu; ^ likelihoodcmp.c:277:31: warning: variable 'dmu' set but not used [-Wunused-but-set-variable] double dkappa, rkappa, ddf, dmu; ^ likelihoodcmp.c:278:18: warning: variable 'dsigma2' set but not used [-Wunused-but-set-variable] double dsigma, dsigma2, dmuproposal, dsigmaproposal; ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mcmc.c -o mcmc.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmp.c -o posteriorcmp.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmp2.c -o posteriorcmp2.o mcmc.c:30:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ mcmc.c:30:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ mcmc.c:30:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ mcmc.c:30:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ mcmc.c:234:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ mcmc.c:234:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ mcmc.c:234:25: warning: variable 'dmu0' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ mcmc.c:234:31: warning: variable 'dsigma0' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ mcmc.c:234:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ mcmc.c:234:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ mcmc.c:342:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable] int i, Ki, Ni, isamp, iinterval, isamplesize, iburnin; ^ mcmc.c:348:40: warning: variable 'logK' set but not used [-Wunused-but-set-variable] double dkappa0, rkappa0, ddf0, dmu0, logK; ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmpdisease.c -o posteriorcmpdisease.o posteriorcmp.c:280:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable] int i, Ki, Ni, isamp, iinterval, isamplesize, iburnintheta; ^ posteriorcmp2.c:38:10: warning: variable 'ddfmu' set but not used [-Wunused-but-set-variable] double ddfmu, ddfsigma, dnuproposal; ^ posteriorcmp2.c:38:17: warning: variable 'ddfsigma' set but not used [-Wunused-but-set-variable] double ddfmu, ddfsigma, dnuproposal; ^ posteriorcmp2.c:38:27: warning: variable 'dnuproposal' set but not used [-Wunused-but-set-variable] double ddfmu, ddfsigma, dnuproposal; ^ posteriorcmpdisease.c:33:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; ^ posteriorcmpdisease.c:33:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; ^ posteriorcmpdisease.c:33:55: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; ^ posteriorcmpdisease.c:33:68: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; ^ 9 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmpvis.c -o posteriorcmpvis.o 3 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmpvis2.c -o posteriorcmpvis2.o posteriorcmpvis.c:526:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable] double dmemnu, dmemnur; ^ posteriorcmpvis2.c:61:16: warning: variable 'temp2' set but not used [-Wunused-but-set-variable] double temp, temp2, uprob1, uprob2; ^ posteriorcmpvis2.c:62:10: warning: unused variable 'rtprob' [-Wunused-variable] double rtprob, lliki; ^ posteriorcmpvis2.c:625:16: warning: unused variable 'rtprob' [-Wunused-variable] double temp, rtprob; ^ posteriorcmpvis2.c:636:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable] double dmemnu, dmemnur; ^ 12 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmpwpvis.c -o posteriorcmpwpvis.o 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmpwpvis2.c -o posteriorcmpwpvis2.o posteriorcmpwpvis.c:58:10: warning: unused variable 'rtprob' [-Wunused-variable] double rtprob, lliki; ^ posteriorcmpwpvis.c:482:16: warning: unused variable 'rtprob' [-Wunused-variable] double temp, rtprob; ^ posteriorcmpwpvis.c:495:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable] double dmemnu, dmemnur; ^ posteriorcmpwpvis2.c:64:16: warning: variable 'temp2' set but not used [-Wunused-but-set-variable] double temp, temp2, uprob1, uprob2; ^ posteriorcmpwpvis2.c:650:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable] double dmemnu, dmemnur; ^ 4 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorcmpwpvis_binomial.c -o posteriorcmpwpvis_binomial.o posteriorcmpwpvis_binomial.c:486:18: warning: variable 'dmemnur' set but not used [-Wunused-but-set-variable] double dmemnu, dmemnur; ^ 4 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriornbinom.c -o posteriornbinom.o posteriornbinom.c:31:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ posteriornbinom.c:31:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ posteriornbinom.c:31:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ posteriornbinom.c:31:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ posteriornbinom.c:239:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable] int i, Ki, Ni, isamp, iinterval, isamplesize, iburnin; ^ posteriornbinom.c:245:40: warning: variable 'logK' set but not used [-Wunused-but-set-variable] double dkappa0, rkappa0, ddf0, dmu0, logK; ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorpln.c -o posteriorpln.o posteriorpln.c:31:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ posteriorpln.c:31:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ posteriorpln.c:31:40: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ posteriorpln.c:31:53: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dsigma0, dmuproposal, dsigmaproposal; ^ posteriorpln.c:248:14: warning: variable 'Ni' set but not used [-Wunused-but-set-variable] int i, Ki, Ni, isamp, iinterval, isamplesize, iburnin; ^ 3 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c posteriorplndisease.c -o posteriorplndisease.o posteriorplndisease.c:32:10: warning: variable 'dkappa0' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; ^ posteriorplndisease.c:32:19: warning: variable 'ddf0' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; ^ posteriorplndisease.c:32:55: warning: variable 'dmuproposal' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; ^ posteriorplndisease.c:32:68: warning: variable 'dsigmaproposal' set but not used [-Wunused-but-set-variable] double dkappa0, ddf0, dmu0, dmu1, dsigma0, dsigma1, dmuproposal, dsigmaproposal; ^ 4 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ppspolya.c -o ppspolya.o 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c size.c -o size.o 6 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c size.older.c -o size.older.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sizeall.c -o sizeall.o size.c:102:12: warning: variable 'Nd' set but not used [-Wunused-but-set-variable] double Nd, lcardN, Kd, Md, lM; ^ size.c:102:32: warning: variable 'lM' set but not used [-Wunused-but-set-variable] double Nd, lcardN, Kd, Md, lM; ^ size.c:226:12: warning: variable 'mhtn' set but not used [-Wunused-but-set-variable] double mhtn; ^ size.c:228:12: warning: variable 'Nd' set but not used [-Wunused-but-set-variable] double Nd, Kd, Md, lM; ^ size.c:228:16: warning: variable 'Kd' set but not used [-Wunused-but-set-variable] double Nd, Kd, Md, lM; ^ size.c:228:24: warning: variable 'lM' set but not used [-Wunused-but-set-variable] double Nd, Kd, Md, lM; ^ size.older.c:155:16: warning: variable 'lM' set but not used [-Wunused-but-set-variable] double Md, lM; ^ size.older.c:222:20: warning: variable 'lM' set but not used [-Wunused-but-set-variable] double Nc, Md, lM; ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sspse_init.c -o sspse_init.o 5 warnings generated. 2 warnings generated. 2 warnings generated. 6 warnings generated. 4 warnings generated. clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o sspse.so cmp.o dis.o dpoilog.o getinclC.o getinclCstacked.o likelihoodcmp.o mcmc.o posteriorcmp.o posteriorcmp2.o posteriorcmpdisease.o posteriorcmpvis.o posteriorcmpvis2.o posteriorcmpwpvis.o posteriorcmpwpvis2.o posteriorcmpwpvis_binomial.o posteriornbinom.o posteriorpln.o posteriorplndisease.o ppspolya.o size.o size.older.o sizeall.o sspse_init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/sspse.Rcheck/00LOCK-sspse/00new/sspse/libs ** generating debug symbols (dSYM) ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sspse)