* installing *source* package ‘spsurv’ ... ** package ‘spsurv’ successfully unpacked and MD5 sums checked ** using staged installation DIAGNOSTIC(S) FROM PARSER: Info: Left-hand side of sampling statement (~) may contain a non-linear transform of a parameter or local variable. If it does, you need to include a target += statement with the log absolute determinant of the Jacobian of the transform. Left-hand-side of sampling statement: beta_std ~ normal(...) Info: Left-hand side of sampling statement (~) may contain a non-linear transform of a parameter or local variable. If it does, you need to include a target += statement with the log absolute determinant of the Jacobian of the transform. Left-hand-side of sampling statement: beta_std ~ cauchy(...) ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using C++17 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_spbp.cc -o stanExports_spbp.o In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Core:540: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:2: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/LU:47: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Cholesky:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Jacobi:29: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Cholesky:43: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/QR:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Householder:27: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/QR:48: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SVD:48: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"../inst/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -D_HAS_AUTO_PTR_ETC=0 -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include' -I/opt/R/x86_64/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fPIC -falign-functions=64 -Wall -g -O2 -c stanExports_spbp_frailty.cc -o stanExports_spbp_frailty.o In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:6: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Geometry:58: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:30: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Eigenvalues:58: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:66: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:27: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/OrderingMethods:71: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCholesky:43: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseLU:33: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseQR:34: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/CholmodSupport:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:39: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/Polynomials:135: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:40: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:40: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Core:540: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:2: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/LU:47: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Cholesky:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Jacobi:29: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Cholesky:43: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/QR:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Householder:27: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/QR:48: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SVD:48: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:6: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Geometry:58: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Eigenvalues:58: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:66: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:27: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/OrderingMethods:71: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ 22 warnings generated. In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCholesky:43: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseLU:33: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseQR:34: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Core:540: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:2: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/LU:47: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Cholesky:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Jacobi:29: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Cholesky:43: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/QR:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Householder:27: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/QR:48: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SVD:48: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:6: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Geometry:58: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Dense:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Eigenvalues:58: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCore:66: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:27: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/OrderingMethods:71: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseCholesky:43: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseLU:33: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/SparseQR:34: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:14: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/Sparse:33: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/IterativeLinearSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/CholmodSupport:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:39: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/Polynomials:135: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:40: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:40: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/CholmodSupport:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/KroneckerProduct:34: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:39: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/Polynomials:135: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:40: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:44: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:239:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/RcppEigenForward.h:40: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported/Eigen/SparseExtra:51: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/Eigen/src/Core/util/ReenableStupidWarnings.h:14:30: warning: pragma diagnostic pop could not pop, no matching push [-Wunknown-pragmas] #pragma clang diagnostic pop ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat.hpp:283: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/gaussian_dlm_obs_rng.hpp:138:7: warning: unused variable 'n' [-Wunused-variable] int n = G.rows(); // number of states ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat.hpp:283: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/gaussian_dlm_obs_rng.hpp:138:7: warning: unused variable 'n' [-Wunused-variable] int n = G.rows(); // number of states ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:17: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/fun/columns_dot_self.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/fun/dot_self.hpp:38:41: warning: all paths through this function will call itself [-Winfinite-recursion] inline static double square(double x) { return square(x); } ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:17: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/fun/columns_dot_self.hpp:8: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/fun/dot_self.hpp:38:41: warning: all paths through this function will call itself [-Winfinite-recursion] inline static double square(double x) { return square(x); } ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:70: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/functor/integrate_ode_adams.hpp:5: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/functor/cvodes_integrator.hpp:126:18: warning: unused variable 'coupled_size' [-Wunused-variable] const size_t coupled_size = cvodes_data.coupled_ode_.size(); ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:70: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/functor/integrate_ode_adams.hpp:5: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/functor/cvodes_integrator.hpp:126:18: warning: unused variable 'coupled_size' [-Wunused-variable] const size_t coupled_size = cvodes_data.coupled_ode_.size(); ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:1238:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:1238:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable] int ret = stan::services::error_codes::CONFIG; ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:6: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core.hpp:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] static void set_zero_all_adjoints() { ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:6: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core.hpp:47: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints_nested.hpp:17:13: warning: 'static' function 'set_zero_all_adjoints_nested' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration] static void set_zero_all_adjoints_nested() { ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat.hpp:278: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/dirichlet_log.hpp:5: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/dirichlet_lpmf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef] using T_partials_vec = typename Eigen::Matrix; ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat.hpp:328: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_log.hpp:5: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_lpmf.hpp:52:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef] using T_alpha_val = typename std::conditional_t< ^ In file included from stanExports_spbp.cc:5: In file included from ./stanExports_spbp.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:51: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/fun/squared_distance.hpp:27:11: warning: unused type alias 'idx_t' [-Wunused-local-typedef] using idx_t = typename index_type::type; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/fun/squared_distance.hpp:64:11: warning: unused type alias 'idx_t' [-Wunused-local-typedef] using idx_t = typename index_type::type; ^ In file included from stanExports_spbp.cc:5: ./stanExports_spbp.h:779:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef] typedef double local_scalar_t__; ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:6: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core.hpp:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: unused function 'set_zero_all_adjoints' [-Wunused-function] static void set_zero_all_adjoints() { ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:6: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core.hpp:47: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints_nested.hpp:17:13: warning: 'static' function 'set_zero_all_adjoints_nested' declared in header file should be declared 'static inline' [-Wunneeded-internal-declaration] static void set_zero_all_adjoints_nested() { ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat.hpp:278: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/dirichlet_log.hpp:5: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/dirichlet_lpmf.hpp:60:9: warning: unused type alias 'T_partials_vec' [-Wunused-local-typedef] using T_partials_vec = typename Eigen::Matrix; ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat.hpp:328: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_log.hpp:5: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/mat/prob/poisson_log_glm_lpmf.hpp:52:9: warning: unused type alias 'T_alpha_val' [-Wunused-local-typedef] using T_alpha_val = typename std::conditional_t< ^ In file included from stanExports_spbp_frailty.cc:5: In file included from ./stanExports_spbp_frailty.h:20: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/rstaninc.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include/rstan/stan_fit.hpp:35: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/test_gradients.hpp:7: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat.hpp:51: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/fun/squared_distance.hpp:27:11: warning: unused type alias 'idx_t' [-Wunused-local-typedef] using idx_t = typename index_type::type; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/rev/mat/fun/squared_distance.hpp:64:11: warning: unused type alias 'idx_t' [-Wunused-local-typedef] using idx_t = typename index_type::type; ^ In file included from stanExports_spbp_frailty.cc:5: ./stanExports_spbp_frailty.h:766:24: warning: unused typedef 'local_scalar_t__' [-Wunused-local-typedef] typedef double local_scalar_t__; ^ 33 warnings generated. 33 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o spsurv.so RcppExports.o stanExports_spbp.o stanExports_spbp_frailty.o -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/lib/ -Wl,-rpath,/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/lib/ -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/spsurv.Rcheck/00LOCK-spsurv/00new/spsurv/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading DIAGNOSTIC(S) FROM PARSER: Info: Left-hand side of sampling statement (~) may contain a non-linear transform of a parameter or local variable. If it does, you need to include a target += statement with the log absolute determinant of the Jacobian of the transform. Left-hand-side of sampling statement: beta_std ~ normal(...) Info: Left-hand side of sampling statement (~) may contain a non-linear transform of a parameter or local variable. If it does, you need to include a target += statement with the log absolute determinant of the Jacobian of the transform. Left-hand-side of sampling statement: beta_std ~ cauchy(...) ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spsurv)