* installing *source* package ‘sequoia’ ...
** package ‘sequoia’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’
using SDK: ‘MacOSX11.3.sdk’
/opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c MkRelA.f90 -o MkRelA.o
/opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c Sequoia.f90 -o Sequoia.o
/opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c SimGenoErrors.f90 -o SimGenoErrors.o
/opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c countpairOH.f90 -o countpairOH.o
/opt/gfortran/bin/gfortran -arch x86_64 -fPIC -Wall -g -O2 -c ester.f90 -o ester.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pretty_R_print.c -o pretty_R_print.o
countpairOH.f90:2:2:
2 | implicit none
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:4:2:
4 | integer, intent(IN) :: ng, nm, np, maxoh
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:5:2:
5 | integer, intent(IN) :: pairids(2*np), genofr(ng*nm)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:6:2:
6 | integer, intent(INOUT) :: ohrf(np)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:7:2:
7 | integer :: i,j, l,x, pairs(np, 2), Genos(nm, ng), IsOppHom(-1:2,-1:2)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:9:2:
9 | pairs(:,1) = pairids(1:np)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:10:2:
10 | pairs(:,2) = pairids((np+1):(2*np))
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:13:2:
13 | Genos = -1
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:14:2:
14 | j = 0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:15:2:
15 | do l=1,nm
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:16:2:
16 | do i=1, ng
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:17:2:
17 | j = j+1
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:18:2:
18 | if (GenoFR(j)>=0) then
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:19:2:
19 | Genos(l,i) = GenoFR(j)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:20:2:
20 | endif
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:21:2:
21 | enddo
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:22:2:
22 | enddo
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:25:2:
25 | IsOppHom = 0
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:30:2:
30 | do x=1, np
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:32:2:
32 | ohrf(x) = calcOH(pairs(x,1), pairs(x,2))
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:33:2:
33 | enddo
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
countpairOH.f90:37:2:
37 | integer function calcOH(i,j) result(OH_ij)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
Sequoia.f90:3913:58:
3913 | double precision :: LLcp(3,2), LLU(4), U, ALR(3,2), ALRtmp, LLtmp, LLtrio(6), &
| 1
Warning: Unused variable ‘alrtmp’ declared at (1) [-Wunused-variable]
Sequoia.f90:16080:47:
16080 | integer :: i, r, AncB(2,mxA), Bi, AncBi(2, mxA), catA, catB, GA(2), catG, &
| 1
Warning: Unused variable ‘ancbi’ declared at (1) [-Wunused-variable]
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o sequoia.so MkRelA.o Sequoia.o SimGenoErrors.o countpairOH.o ester.o init.o pretty_R_print.o -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: could not create compact unwind for _fsmerge_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _parenthfs_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _pairgp_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _pairggp_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _dummygp_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _selectparent_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _parentage_: stack subq instruction is too different from dwarf stack size
ld: warning: could not create compact unwind for _ggpairs_: stack subq instruction is too different from dwarf stack size
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/sequoia.Rcheck/00LOCK-sequoia/00new/sequoia/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (sequoia)