* installing *source* package ‘rtmpt’ ... ** package ‘rtmpt’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c Quelle.cpp -o Quelle.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c adaptive_rejection_sampling.cpp -o adaptive_rejection_sampling.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c additions.cpp -o additions.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c derivatives.cpp -o derivatives.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c diagnosis.cpp -o diagnosis.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c diffusion.cpp -o diffusion.o Quelle.cpp:65:42: warning: unused variable 'igr' [-Wunused-variable] int r = cat2resp[daten[x].category], igr = t2group[t] * respno + r, itr = t * respno + r; ^ Quelle.cpp:82:10: warning: unused variable 'igr' [-Wunused-variable] int igr = t2group[t] * respno + r, itr = t * respno + r; ^ Quelle.cpp:217:31: warning: unused variable 'igr' [-Wunused-variable] int itr = t * respno + r, igr = t2group[t] * respno + r; ^ Quelle.cpp:234:32: warning: unused variable 'igr' [-Wunused-variable] int itr = t * respno + r, igr = t2group[t] * respno + r; ^ diagnosis.cpp:228:21: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if ((complength == 1) /*&& (PFAD_INDEX(j, k) > -1)*/) { ~~~~~~~~~~~^~~~ diagnosis.cpp:228:21: note: remove extraneous parentheses around the comparison to silence this warning if ((complength == 1) /*&& (PFAD_INDEX(j, k) > -1)*/) { ~ ^ ~ diagnosis.cpp:228:21: note: use '=' to turn this equality comparison into an assignment if ((complength == 1) /*&& (PFAD_INDEX(j, k) > -1)*/) { ^~ = diagnosis.cpp:1038:24: warning: unused variable 'pd' [-Wunused-variable] double dbar = 0.0, pd = 0.0, pv = 0.0; ^ diagnosis.cpp:1275:9: warning: variable 'exit_status' set but not used [-Wunused-but-set-variable] int exit_status = 0; ^ diagnosis.cpp:1291:9: warning: variable 'exit_status' set but not used [-Wunused-but-set-variable] int exit_status = 1; ^ diagnosis.cpp:1292:9: warning: unused variable 'kein' [-Wunused-variable] int kein = kerncat * indi, keig = kerncat * igroup; ^ diagnosis.cpp:1507:9: warning: unused variable 'nq' [-Wunused-variable] int nq = 1; ^ diagnosis.cpp:1564:9: warning: variable 'exit_status' set but not used [-Wunused-but-set-variable] int exit_status = 0; ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c gibbs.cpp -o gibbs.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c hamiltonian.cpp -o hamiltonian.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c hcubature.cpp -o hcubature.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c invtri.c -o invtri.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c joint.cpp -o joint.o 4 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c lkj.cpp -o lkj.o gibbs.cpp:26:11: warning: unused variable 'old_path' [-Wunused-variable] int old_path = paths[x]; ^ hcubature.cpp:282:9: warning: unused variable 'kdiv' [-Wunused-variable] int kdiv = out.kdivide; ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c lnnorm.cpp -o lnnorm.o joint.cpp:116:9: warning: unused variable 'sdt' [-Wunused-variable] int sdt = indi * respno + t; ^ joint.cpp:301:9: warning: unused variable 'iofft' [-Wunused-variable] int iofft = iavwoff + t * icompg, itfr = 3 * t * ifreemax; ^ joint.cpp:401:29: warning: unused variable 'ipl' [-Wunused-variable] int i = root->index, ipl = i + root->level; ^ joint.cpp:444:8: warning: unused variable 'xn' [-Wunused-variable] int xn = isigoff + indi; ^ lkj.cpp:90:8: warning: variable 'offset2' set but not used [-Wunused-but-set-variable] int offset2 = nhamil; ^ 1 warning generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c main.cpp -o main.o lnnorm.cpp:31:13: warning: variable 'upper' set but not used [-Wunused-but-set-variable] int upper, lower ; ^ 1 warning generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c mvtimes.cpp -o mvtimes.o 4 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c onetimes.cpp -o onetimes.o 1 warning generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c r_wrapper.cpp -o r_wrapper.o 1 warning generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c rtimes.cpp -o rtimes.o onetimes.cpp:140:21: warning: equality comparison with extraneous parentheses [-Wparentheses-equality] if ((complength == 1) /*&& (PFAD_INDEX(j, k) > -1)*/) { ~~~~~~~~~~~^~~~ onetimes.cpp:140:21: note: remove extraneous parentheses around the comparison to silence this warning if ((complength == 1) /*&& (PFAD_INDEX(j, k) > -1)*/) { ~ ^ ~ onetimes.cpp:140:21: note: use '=' to turn this equality comparison into an assignment if ((complength == 1) /*&& (PFAD_INDEX(j, k) > -1)*/) { ^~ = mvtimes.cpp:1616:9: warning: variable 'acc' set but not used [-Wunused-but-set-variable] int acc = 0; ^ onetimes.cpp:423:11: warning: unknown pragma ignored [-Wunknown-pragmas] #pragma optimize("", off) ^ onetimes.cpp:436:11: warning: unknown pragma ignored [-Wunknown-pragmas] #pragma optimize("", on) ^ onetimes.cpp:498:9: warning: unused variable 'n' [-Wunused-variable] int n = (pars->n), m = (pars->m); ^ onetimes.cpp:578:23: warning: unused variable 'xx' [-Wunused-variable] gsl_vector* xx = gsl_vector_alloc(icompg + 2); ^ onetimes.cpp:689:19: warning: unused variable 'xx' [-Wunused-variable] gsl_vector* xx = gsl_vector_alloc(icompg + 2); ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c rtmpt_init.c -o rtmpt_init.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c rwiener.cpp -o rwiener.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c specifics.cpp -o specifics.o 7 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c times.cpp -o times.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c tools.cpp -o tools.o 6 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/usr/local/include -fPIC -falign-functions=64 -Wall -g -O2 -c trait.cpp -o trait.o times.cpp:122:8: warning: variable 'exit_status' set but not used [-Wunused-but-set-variable] int exit_status = 0; ^ tools.cpp:60:12: warning: unused variable 'result' [-Wunused-variable] double result; ^ tools.cpp:290:9: warning: unused variable 'm' [-Wunused-variable] int m = (irun + 1) * ireps; ^ tools.cpp:805:9: warning: unused variable 'pfadlength' [-Wunused-variable] int pfadlength = (params->pfadlength); ^ 1 warning generated. 1 warning generated. 3 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o rtmpt.so Quelle.o adaptive_rejection_sampling.o additions.o derivatives.o diagnosis.o diffusion.o gibbs.o hamiltonian.o hcubature.o invtri.o joint.o lkj.o lnnorm.o main.o mvtimes.o onetimes.o r_wrapper.o rtimes.o rtmpt_init.o rwiener.o specifics.o times.o tools.o trait.o -L/usr/local/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/rtmpt.Rcheck/00LOCK-rtmpt/00new/rtmpt/libs ** generating debug symbols (dSYM) ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rtmpt)