* installing *source* package ‘ridge’ ...
** package ‘ridge’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... clang -arch x86_64
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether clang -arch x86_64 accepts -g... yes
checking for clang -arch x86_64 option to enable C11 features... none needed
checking for gsl-config... /opt/R/x86_64/bin/gsl-config
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for gsl/gsl_version.h... yes
configure: creating ./config.status
config.status: creating R/linearRidgeGenotypes.R
config.status: creating R/linearRidgeGenotypesPredict.R
config.status: creating R/logisticRidgeGenotypes.R
config.status: creating R/logisticRidgeGenotypesPredict.R
config.status: creating src/Makevars
config.status: creating src/config.h
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ReadInData.c -o ReadInData.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c commonFunctions.c -o commonFunctions.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c computeLinearRidge.c -o computeLinearRidge.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c computePvals.c -o computePvals.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c coordinateDescent.c -o coordinateDescent.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c linear.c -o linear.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c linearFunctions.c -o linearFunctions.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c logistic.c -o logistic.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c logisticFunctions.c -o logisticFunctions.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c registration.c -o registration.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c regression_wrapper_function.c -o regression_wrapper_function.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ridgeRegressionFunctions.c -o ridgeRegressionFunctions.o
ridgeRegressionFunctions.c:371:7: warning: variable 'contains_nans' set but not used [-Wunused-but-set-variable]
  int contains_nans = 0;
      ^
1 warning generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c thin.c -o thin.o
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o ridge.so ReadInData.o commonFunctions.o computeLinearRidge.o computePvals.o coordinateDescent.o linear.o linearFunctions.o logistic.o logisticFunctions.o registration.o regression_wrapper_function.o ridgeRegressionFunctions.o thin.o -L/opt/R/x86_64/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/ridge.Rcheck/00LOCK-ridge/00new/ridge/libs
** generating debug symbols (dSYM)
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ridge)