* using log directory ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.3/pcalg.Rcheck’
* using R version 4.3.2 (2023-10-31)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.3.1
* using session charset: UTF-8
* checking for file ‘pcalg/DESCRIPTION’ ... OK
* this is package ‘pcalg’ version ‘2.7-11’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘pcalg’ can be installed ... [55s/46s] OK
See 'https://www.r-project.org/nosvn/R.check/r-oldrel-macos-x86_64/pcalg-00install.html' for details.
* used C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
* used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... NOTE
  installed size is 11.3Mb
  sub-directories of 1Mb or more:
    data   2.1Mb
    libs   6.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
* checking whether the package can be unloaded cleanly ... [1s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
* checking loading without being on the library search path ... [1s/2s] OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [18s/32s] OK
* checking Rd files ... [1s/2s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [20s/31s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [93s/177s] OK
  Running ‘test_LINGAM.R’ [2s/3s]
  Running ‘test_addBgKnowledge.R’ [2s/2s]
  Running ‘test_adjustment.R’ [3s/3s]
  Running ‘test_ages.R’ [2s/3s]
  Running ‘test_amat2dag.R’ [1s/2s]
  Running ‘test_arges.R’ [1s/2s]
  Running ‘test_backdoor.R’ [5s/9s]
  Comparing ‘test_backdoor.Rout’ to ‘test_backdoor.Rout.save’ ... OK
  Running ‘test_bicscore.R’ [2s/3s]
  Running ‘test_causalEffect.R’ [1s/2s]
  Running ‘test_coercion.R’ [1s/2s]
  Running ‘test_compareGraphs.R’ [1s/3s]
  Running ‘test_dag2cpdag.R’ [1s/3s]
  Running ‘test_dag2essgraph.R’ [2s/3s]
  Running ‘test_displayAmat.R’ [1s/3s]
  Running ‘test_dsep.R’ [1s/3s]
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  Running ‘test_gSquareBin.R’ [1s/2s]
  Running ‘test_gSquareDis.R’ [2s/5s]
  Running ‘test_gac.R’ [2s/5s]
  Running ‘test_getNextSet.R’ [1s/2s]
  Running ‘test_gies.R’ [2s/5s]
  Running ‘test_ida.R’ [5s/12s]
  Running ‘test_idaFast.R’ [3s/7s]
  Running ‘test_isValidGraph.R’ [2s/5s]
  Running ‘test_jointIda.R’ [2s/2s]
  Running ‘test_mat2targets.R’ [2s/3s]
  Running ‘test_optAdjSet.R’ [2s/2s]
  Running ‘test_opttarget.R’ [1s/2s]
  Running ‘test_pag2anc.R’ [1s/2s]
  Running ‘test_pag2conf.R’ [1s/2s]
  Running ‘test_pag2edge.R’ [1s/2s]
  Running ‘test_pc.R’ [2s/4s]
  Running ‘test_pcSelect.R’ [3s/4s]
  Running ‘test_pcalg2dagitty.R’ [2s/4s]
  Running ‘test_pcorOrder.R’ [1s/2s]
  Running ‘test_pdag2allDags.R’ [1s/2s]
  Running ‘test_pdag2dag.R’ [1s/2s]
  Running ‘test_possDeAn.R’ [2s/2s]
  Running ‘test_randDAG.R’ [3s/5s]
  Comparing ‘test_randDAG.Rout’ to ‘test_randDAG.Rout.save’ ...1a2,4
> R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
> Copyright (C) 2023 The R Foundation for Statistical Computing
> Platform: x86_64-pc-linux-gnu (64-bit)
2a6,17
> R ist freie Software und kommt OHNE JEGLICHE GARANTIE.
> Sie sind eingeladen, es unter bestimmten Bedingungen weiter zu verbreiten.
> Tippen Sie 'license()' or 'licence()' für Details dazu.
> 
> R ist ein Gemeinschaftsprojekt mit vielen Beitragenden.
> Tippen Sie 'contributors()' für mehr Information und 'citation()',
> um zu erfahren, wie R oder R packages in Publikationen zitiert werden können.
> 
> Tippen Sie 'demo()' für einige Demos, 'help()' für on-line Hilfe, oder
> 'help.start()' für eine HTML Browserschnittstelle zur Hilfe.
> Tippen Sie 'q()', um R zu verlassen.
> 
174a190
> Lade nötiges Paket: Matrix
  Running ‘test_randomDAG.R’ [1s/2s]
  Running ‘test_rfci.R’ [2s/5s]
  Running ‘test_rmvDAG.R’ [1s/3s]
  Running ‘test_searchAM.R’ [1s/3s]
  Running ‘test_shd.R’ [1s/3s]
  Running ‘test_skeleton.R’ [3s/6s]
  Running ‘test_udag2pag.R’ [1s/2s]
  Running ‘test_udag2pdag.R’ [4s/8s]
  Running ‘test_wgtMatrix.R’ [1s/3s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... [13s/20s] OK
  ‘vignette2018.Rnw’ using ‘UTF-8’... [13s/20s] OK
* checking re-building of vignette outputs ... [30s/54s] OK
* checking PDF version of manual ... [11s/25s] OK
* DONE
Status: 1 NOTE
* using check arguments '--no-clean-on-error '

* elapsed time (check, wall clock): 7:34