* using log directory ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.3/mcemGLM.Rcheck’ * using R version 4.3.0 beta (2023-04-07 r84200) * using platform: x86_64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.3 (clang-1403.0.22.14.1) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.3 * using session charset: UTF-8 * checking for file ‘mcemGLM/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘mcemGLM’ version ‘1.1.3’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mcemGLM’ can be installed ... [320s/487s] OK See 'https://www.r-project.org/nosvn/R.check/r-oldrel-macos-x86_64/mcemGLM-00install.html' for details. * used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ * used SDK: ‘MacOSX11.3.sdk’ * checking installed package size ... NOTE installed size is 16.4Mb sub-directories of 1Mb or more: doc 3.8Mb libs 12.3Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [5s/7s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking compiled code ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [0s/1s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... [14m/21m] ERROR Errors in running code in vignettes: when running code in ‘mcemGLM-vignette.Rnw’ ... 6 : 6 6 : 6 Max. :1.000 (Other):324 (Other):324 > fitBernoulli <- mcemGLMM(fixed = Mate ~ 0 + Cross, + random = list(~0 + Female, ~0 + Male), data = salamander, + family = "bernoulli", vcD .... [TRUNCATED] Execution halted ... incomplete output. Crash? ‘mcemGLM-vignette.Rnw’... failed to complete the test * checking re-building of vignette outputs ...* using check arguments '--no-clean-on-error ' * elapsed time (check, wall clock): 30:03