* installing *source* package ‘kernlab’ ... ** package ‘kernlab’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c brweight.cpp -o brweight.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ctable.cpp -o ctable.o ctable.cpp:60:9: warning: variable 'lcp_idx' set but not used [-Wunused-but-set-variable] UInt32 lcp_idx = 0, lcp_prev_idx = 0; ^ ctable.cpp:60:22: warning: variable 'lcp_prev_idx' set but not used [-Wunused-but-set-variable] UInt32 lcp_idx = 0, lcp_prev_idx = 0; ^ 2 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cweight.cpp -o cweight.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dbreakpt.c -o dbreakpt.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dcauchy.c -o dcauchy.o dcauchy.c:91:29: warning: variable 'nsteps' set but not used [-Wunused-but-set-variable] int search, interp, nbrpt, nsteps = 1, i, inc = 1; ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dgpnrm.c -o dgpnrm.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dgpstep.c -o dgpstep.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dprecond.c -o dprecond.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dprsrch.c -o dprsrch.o dprsrch.c:93:25: warning: variable 'nsteps' set but not used [-Wunused-but-set-variable] int search = 1, nbrpt, nsteps = 0, i, inc = 1; ^ 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dspcg.c -o dspcg.o dspcg.c:115:44: warning: variable 'iters' set but not used [-Wunused-but-set-variable] int i, j, nfaces, nfree, inc = 1, infotr, iters = 0, itertr; ^ dspcg.c:116:40: warning: variable 'alpha' set but not used [-Wunused-but-set-variable] double gfnorm, gfnormf, stol = 1e-16, alpha; ^ 2 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dtron.c -o dtron.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dtrpcg.c -o dtrpcg.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dtrqsol.c -o dtrqsol.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c esa.cpp -o esa.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c expdecayweight.cpp -o expdecayweight.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c inductionsort.cpp -o inductionsort.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c kspectrumweight.cpp -o kspectrumweight.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lcp.cpp -o lcp.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c misc.c -o misc.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c msufsort.cpp -o msufsort.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c solvebqp.c -o solvebqp.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c stringk.c -o stringk.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c stringkernel.cpp -o stringkernel.o In file included from stringkernel.cpp:53: ./stringkernel.h:106:7: warning: private field '_verb' is not used [-Wunused-private-field] int _verb; ^ 1 warning generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c svm.cpp -o svm.o svm.cpp:1474:6: warning: variable 'iter' set but not used [-Wunused-but-set-variable] int iter = 0, counter = min(l*2, 2000) + 1; ^ svm.cpp:1549:9: warning: variable 'obj' set but not used [-Wunused-but-set-variable] double obj = 0; ^ svm.cpp:1556:6: warning: variable 'nSV' set but not used [-Wunused-but-set-variable] int nSV = 0, nFREE = 0; ^ svm.cpp:1556:15: warning: variable 'nFREE' set but not used [-Wunused-but-set-variable] int nSV = 0, nFREE = 0; ^ svm.cpp:1857:6: warning: variable 'iter' set but not used [-Wunused-but-set-variable] int iter = 0; ^ svm.cpp:2152:6: warning: 'Solver_B_linear::Solve' hides overloaded virtual function [-Woverloaded-virtual] int Solve(int l, svm_node * const * x_, double *b_, schar *y_, ^ svm.cpp:1709:15: note: hidden overloaded virtual function 'Solver_B::Solve' declared here: different number of parameters (11 vs 12) virtual void Solve(int l, const Kernel& Q, double *b_, schar *y_, ^ svm.cpp:2431:7: warning: 'Solver_MB::Solve' hides overloaded virtual function [-Woverloaded-virtual] void Solve(int l, const Kernel& Q, double lin, double *alpha_, ^ svm.cpp:1709:15: note: hidden overloaded virtual function 'Solver_B::Solve' declared here: different number of parameters (11 vs 12) virtual void Solve(int l, const Kernel& Q, double *b_, schar *y_, ^ svm.cpp:2665:6: warning: variable 'iter' set but not used [-Wunused-but-set-variable] int iter = 0; ^ svm.cpp:3626:7: warning: variable 'totaliter' set but not used [-Wunused-but-set-variable] int totaliter = 0; ^ svm.cpp:3715:7: warning: variable 'totaliter' set but not used [-Wunused-but-set-variable] int totaliter = 0; ^ svm.cpp:3758:9: warning: variable 'sum_alpha' set but not used [-Wunused-but-set-variable] double sum_alpha = 0; ^ svm.cpp:3888:17: warning: variable 's' set but not used [-Wunused-but-set-variable] const char* s; ^ svm.cpp:4110:11: warning: variable 'sum_alpha' set but not used [-Wunused-but-set-variable] double sum_alpha = 0; ^ svm.cpp:4189:17: warning: variable 's' set but not used [-Wunused-but-set-variable] const char* s; ^ 14 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c wkasailcp.cpp -o wkasailcp.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c wmsufsort.cpp -o wmsufsort.o clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o kernlab.so brweight.o ctable.o cweight.o dbreakpt.o dcauchy.o dgpnrm.o dgpstep.o dprecond.o dprsrch.o dspcg.o dtron.o dtrpcg.o dtrqsol.o esa.o expdecayweight.o inductionsort.o init.o kspectrumweight.o lcp.o misc.o msufsort.o solvebqp.o stringk.o stringkernel.o svm.o wkasailcp.o wmsufsort.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/kernlab.Rcheck/00LOCK-kernlab/00new/kernlab/libs ** generating debug symbols (dSYM) ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘pattern’ in package ‘kernlab’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kernlab)