* using log directory ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.3/httk.Rcheck’ * using R version 4.3.2 (2023-10-31) * using platform: x86_64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.3.1 * using session charset: UTF-8 * checking for file ‘httk/DESCRIPTION’ ... OK * this is package ‘httk’ version ‘2.3.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘httk’ can be installed ... [21s/36s] OK See 'https://www.r-project.org/nosvn/R.check/r-oldrel-macos-x86_64/httk-00install.html' for details. * used C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ * used SDK: ‘MacOSX11.3.sdk’ * checking installed package size ... NOTE installed size is 6.7Mb sub-directories of 1Mb or more: data 2.2Mb doc 2.3Mb help 1.1Mb * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [2s/3s] OK * checking whether the package can be loaded with stated dependencies ... [2s/3s] OK * checking whether the package can be unloaded cleanly ... [2s/3s] OK * checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK * checking whether the namespace can be unloaded cleanly ... [2s/3s] OK * checking loading without being on the library search path ... [2s/3s] OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [17s/27s] OK * checking Rd files ... [5s/6s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [1s/1s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [34s/58s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [88s/173s] OK Running ‘1comp_test.R’ [6s/12s] Comparing ‘1comp_test.Rout’ to ‘1comp_test.Rout.save’ ... OK Running ‘3comp_test.R’ [6s/12s] Comparing ‘3comp_test.Rout’ to ‘3comp_test.Rout.save’ ... OK Running ‘3compss_test.R’ [3s/6s] Comparing ‘3compss_test.Rout’ to ‘3compss_test.Rout.save’ ... OK Running ‘adddata_test.R’ [4s/8s] Comparing ‘adddata_test.Rout’ to ‘adddata_test.Rout.save’ ... OK Running ‘caco2_test.R’ [5s/10s] Comparing ‘caco2_test.Rout’ to ‘caco2_test.Rout.save’ ... OK Running ‘cheminfo_test.R’ [4s/7s] Comparing ‘cheminfo_test.Rout’ to ‘cheminfo_test.Rout.save’ ... OK Running ‘fetal_pbtk_testing.R’ [5s/9s] Comparing ‘fetal_pbtk_testing.Rout’ to ‘fetal_pbtk_testing.Rout.save’ ... OK Running ‘ivive_test.R’ [11s/21s] Comparing ‘ivive_test.Rout’ to ‘ivive_test.Rout.save’ ... OK Running ‘montecarlo_tests.R’ [13s/25s] Comparing ‘montecarlo_tests.Rout’ to ‘montecarlo_tests.Rout.save’ ... OK Running ‘other_tests.R’ [17s/35s] Comparing ‘other_tests.Rout’ to ‘other_tests.Rout.save’ ... OK Running ‘pbtk_test.R’ [5s/11s] Comparing ‘pbtk_test.Rout’ to ‘pbtk_test.Rout.save’ ... OK Running ‘solve_gas_test.R’ [5s/10s] Comparing ‘solve_gas_test.Rout’ to ‘solve_gas_test.Rout.save’ ... OK Running ‘unit_test.R’ [3s/7s] Comparing ‘unit_test.Rout’ to ‘unit_test.Rout.save’ ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... [5s/9s] NONE ‘V1_IntroToHTTK.Rmd’ using ‘UTF-8’... [0s/1s] OK ‘V2_IntrotoIVIVE.Rmd’ using ‘UTF-8’... [0s/1s] OK ‘Va_Pearce2017.Rmd’ using ‘UTF-8’... [0s/1s] OK ‘Vb_Ring2017.Rmd’ using ‘UTF-8’... [0s/1s] OK ‘Vc_Pearce2017.Rmd’ using ‘UTF-8’... [0s/1s] OK ‘Vd_Frank2019.Rmd’ using ‘UTF-8’... [0s/1s] OK ‘Ve_Wambaugh2018.Rmd’ using ‘UTF-8’... [0s/1s] OK ‘Vf_Honda2019.Rmd’ using ‘UTF-8’... [0s/1s] OK ‘Vg_Wambaugh2019.Rmd’ using ‘UTF-8’... [0s/1s] OK ‘Vh_Linakis2020.Rmd’ using ‘UTF-8’... [0s/1s] OK ‘Vi_Kapraun2022.Rmd’ using ‘UTF-8’... [0s/1s] OK * checking re-building of vignette outputs ... [148s/305s] OK * checking PDF version of manual ... [17s/30s] OK * DONE Status: 1 NOTE * using check arguments '--no-clean-on-error ' * elapsed time (check, wall clock): 12:02