* using log directory ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.3/gadget3.Rcheck’ * using R version 4.3.2 (2023-10-31) * using platform: x86_64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.3.1 * using session charset: UTF-8 * checking for file ‘gadget3/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘gadget3’ version ‘0.11-1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘gadget3’ can be installed ... [5s/11s] OK See 'https://www.r-project.org/nosvn/R.check/r-oldrel-macos-x86_64/gadget3-00install.html' for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [9s/18s] OK * checking Rd files ... [1s/1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [7s/13s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [44s/87s] OK Running ‘test-aab_env.R’ [0s/1s] Running ‘test-action_age.R’ [2s/4s] Running ‘test-action_grow.R’ [1s/2s] Running ‘test-action_mature.R’ [1s/3s] Running ‘test-action_migrate.R’ [1s/3s] Running ‘test-action_naturalmortality.R’ [1s/1s] Running ‘test-action_predate-catchability.R’ [2s/5s] Running ‘test-action_predate-numberfleet.R’ [1s/2s] Running ‘test-action_predate.R’ [2s/5s] Running ‘test-action_renewal.R’ [2s/4s] Running ‘test-action_report.R’ [1s/2s] Running ‘test-action_spawn.R’ [2s/4s] Running ‘test-action_tagging.R’ [1s/2s] Running ‘test-action_time.R’ [1s/2s] Running ‘test-eval.R’ [0s/1s] Running ‘test-formula_utils.R’ [0s/1s] Running ‘test-init_val.R’ [1s/2s] Running ‘test-likelihood_bounds.R’ [1s/3s] Running ‘test-likelihood_data.R’ [1s/1s] Running ‘test-likelihood_distribution-surveyindices.R’ [1s/2s] Running ‘test-likelihood_distribution.R’ [6s/12s] Running ‘test-likelihood_random.R’ [1s/1s] Running ‘test-likelihood_tagging_ckmr.R’ [2s/3s] Running ‘test-likelihood_understocking.R’ [0s/0s] Running ‘test-params.R’ [1s/1s] Running ‘test-run.R’ [0s/1s] Running ‘test-run_r.R’ [1s/1s] Running ‘test-run_tmb-reporting_enabled.R’ [0s/1s] Running ‘test-run_tmb.R’ [1s/3s] Running ‘test-step.R’ [1s/2s] Running ‘test-stock.R’ [0s/1s] Running ‘test-stock_age.R’ [1s/1s] Running ‘test-stock_areas.R’ [1s/2s] Running ‘test-stock_tag.R’ [0s/1s] Running ‘test-stock_time.R’ [1s/1s] Running ‘test-suitability.R’ [1s/3s] Running ‘test-timedata.R’ [1s/1s] Running ‘test-timevariable.R’ [1s/1s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... [3s/4s] NONE ‘incorporating-observation-data.Rmd’ using ‘UTF-8’... [0s/0s] OK ‘introduction-single-stock.Rmd’ using ‘UTF-8’... [0s/0s] OK ‘model-customisation.Rmd’ using ‘UTF-8’... [0s/0s] OK ‘model-debugging.Rmd’ using ‘UTF-8’... [0s/1s] OK ‘model-structure.Rmd’ using ‘UTF-8’... [0s/1s] OK ‘multiple-substocks.Rmd’ using ‘UTF-8’... [0s/1s] OK ‘random-effects.Rmd’ using ‘UTF-8’... [0s/1s] OK ‘writing_actions.Rmd’ using ‘UTF-8’... [0s/1s] OK * checking re-building of vignette outputs ... [37s/77s] OK * checking PDF version of manual ... [8s/17s] OK * DONE Status: OK * using check arguments '--no-clean-on-error ' * elapsed time (check, wall clock): 4:15