* installing *source* package ‘flan’ ... ** package ‘flan’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppGSL/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c FLAN_Clone.cpp -o FLAN_Clone.o FLAN_Clone.cpp:150:11: warning: variable 'i' set but not used [-Wunused-but-set-variable] int i=0; ^ FLAN_Clone.cpp:125:9: warning: variable 'g' set but not used [-Wunused-but-set-variable] int g=0; ^ FLAN_Clone.cpp:660:12: warning: variable 'sumP' set but not used [-Wunused-but-set-variable] double sumP; ^ FLAN_Clone.cpp:761:12: warning: variable 'sumP' set but not used [-Wunused-but-set-variable] double sumP; ^ 4 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppGSL/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c FLAN_MutationModel.cpp -o FLAN_MutationModel.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppGSL/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c FLAN_Sim.cpp -o FLAN_Sim.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppGSL/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c MATH_Function.cpp -o MATH_Function.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppGSL/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -I../inst/include -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppGSL/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_flan_module.cpp -o rcpp_flan_module.o In file included from rcpp_flan_module.cpp:1: In file included from ./rcpp_flan_module.h:4: In file included from ./FLAN_Sim.h:28: In file included from ./FLAN_Clone.h:25: In file included from ./MATH_Function.h:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:32: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include/Rcpp.h:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'FLAN_ExponentialClone' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here void Finalizer(T*) = standard_delete_finalizer, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'FLAN_DiracClone' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here void Finalizer(T*) = standard_delete_finalizer, ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include/Rcpp/XPtr.h:31:5: warning: delete called on non-final 'FLAN_InhomogeneousClone' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor] delete obj; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include/Rcpp/XPtr.h:54:26: note: in instantiation of function template specialization 'Rcpp::standard_delete_finalizer' requested here void Finalizer(T*) = standard_delete_finalizer, ^ 3 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o flan.so FLAN_Clone.o FLAN_MutationModel.o FLAN_Sim.o MATH_Function.o init.o rcpp_flan_module.o -L/opt/R/x86_64/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/flan.Rcheck/00LOCK-flan/00new/flan/libs ** generating debug symbols (dSYM) ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (flan)