* installing *source* package ‘cvam’ ... ** package ‘cvam’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’ using SDK: ‘MacOSX11.3.sdk’ gfortran -arch x86_64 -fPIC -Wall -g -O2 -c program_constants.f90 -o program_constants.o gfortran -arch x86_64 -fPIC -Wall -g -O2 -c error_handler.f90 -o error_handler.o gfortran -arch x86_64 -fPIC -Wall -g -O2 -c dynalloc.f90 -o dynalloc.o gfortran -arch x86_64 -fPIC -Wall -g -O2 -c quick_sort.f90 -o quick_sort.o quick_sort.f90:466:3: 466 | function toupper( sstr1, ilen ) result(sstr2) | ^ Warning: ‘toupper’ defined but not used [-Wunused-function] gfortran -arch x86_64 -fPIC -Wall -g -O2 -c tabulate.f90 -o tabulate.o gfortran -arch x86_64 -fPIC -Wall -g -O2 -c matrix_methods.f90 -o matrix_methods.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mathRC.c -o mathRC.o gfortran -arch x86_64 -fPIC -Wall -g -O2 -c mathRF77.f -o mathRF77.o gfortran -arch x86_64 -fPIC -Wall -g -O2 -c math_R.f90 -o math_R.o gfortran -arch x86_64 -fPIC -Wall -g -O2 -c math_funcs.f90 -o math_funcs.o gfortran -arch x86_64 -fPIC -Wall -g -O2 -c cvam_engine.f90 -o cvam_engine.o cvam_engine.f90:12060:3: 12060 | 800 call err_handle(err, 2, whichsub = subname, whichmod = modname ) | 1 Warning: Label 800 at (1) defined but not used [-Wunused-label] cvam_engine.f90:10691:3: 10691 | 800 call err_handle(err, 2, whichsub = subname, whichmod = modname ) | 1 Warning: Label 800 at (1) defined but not used [-Wunused-label] cvam_engine.f90:5401:22: 5401 | cest = work%estimates(i)%cell | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:5415:22: 5415 | cest = work%estimates(i)%cell | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:5625:25: 5625 | var_old = work%var(jj) | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:5682:25: 5682 | var_old = work%var(jj) | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:6821:22: 6821 | cest = work%estimates(i)%cell | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:6835:22: 6835 | cest = work%estimates(i)%cell | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:3570:18: 3570 | work%cell = 1 + work%cell_fixed_part + work%cell_random_part | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:3628:18: 3628 | work%cell = 1 + work%cell_fixed_part + work%cell_random_part | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:5535:22: 5535 | cest = work%estimates(i)%cell | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:5550:22: 5550 | cest = work%estimates(i)%cell | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:12084:65: 12084 | integer(kind=our_int) :: cov_patt, posn, y, i, j, k, l, ii | 1 Warning: Unused variable ‘ii’ declared at (1) [-Wunused-variable] cvam_engine.f90:12006:14: 12006 | work, logit, mvcode, nancode, infcode, neginfcode, err ) & | 1 Warning: Unused dummy argument ‘work’ at (1) [-Wunused-dummy-argument] cvam_engine.f90:11644:61: 11644 | integer(kind=our_int) function get_pimat_big_logit( work, logit, & | 1 Warning: Unused dummy argument ‘work’ at (1) [-Wunused-dummy-argument] cvam_engine.f90:12967:52: 12967 | integer(kind=our_int) function get_lcmeas_params( lcmeas, params, & | ^ Warning: ‘get_lcmeas_params’ defined but not used [-Wunused-function] cvam_engine.f90:13012:55: 13012 | integer(kind=our_int) function update_lcmeas_params( lcmeas, & | ^ Warning: ‘update_lcmeas_params’ defined but not used [-Wunused-function] cvam_engine.f90:11806:64: 11806 | logit%max_diff_em = max( logit%max_diff_em, max_diff ) | ^ Warning: ‘max_diff’ may be used uninitialized [-Wmaybe-uninitialized] cvam_engine.f90:11714:49: 11714 | real(kind=our_dble) :: sum, rtmp, max_diff | ^ note: ‘max_diff’ was declared here cvam_engine.f90:10948:22: 10948 | if( .not. failed ) call err_handle(err, 1, & | ^ Warning: ‘failed’ may be used uninitialized [-Wmaybe-uninitialized] cvam_engine.f90:10812:45: 10812 | logical :: aborted, aborted_nr, failed, boundary | ^ note: ‘failed’ was declared here cvam_engine.f90:11480:52: 11480 | work%pred(i, logit%xcol(j)) | ^ Warning: ‘i’ may be used uninitialized [-Wmaybe-uninitialized] cvam_engine.f90:11409:26: 11409 | l, m, posnA, i, mvcode, ycol, size_mapset, ystar, jj | ^ note: ‘i’ was declared here gfortran -arch x86_64 -fPIC -Wall -g -O2 -c cvam.f90 -o cvam.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cvam_init.c -o cvam_init.o clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o cvam.so cvam.o cvam_engine.o cvam_init.o dynalloc.o error_handler.o mathRC.o mathRF77.o math_R.o math_funcs.o matrix_methods.o program_constants.o quick_sort.o tabulate.o -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: object file (cvam.o) was built for newer macOS version (13.0) than being linked (11.3) ld: warning: object file (error_handler.o) was built for newer macOS version (13.0) than being linked (11.3) ld: warning: object file (dynalloc.o) was built for newer macOS version (13.0) than being linked (11.3) ld: warning: object file (mathRF77.o) was built for newer macOS version (13.0) than being linked (11.3) ld: warning: object file (math_R.o) was built for newer macOS version (13.0) than being linked (11.3) ld: warning: object file (math_funcs.o) was built for newer macOS version (13.0) than being linked (11.3) ld: warning: could not create compact unwind for _fit_cvam_model_: stack subq instruction is too different from dwarf stack size ld: warning: object file (program_constants.o) was built for newer macOS version (13.0) than being linked (11.3) ld: warning: could not create compact unwind for _cvam_estimate_em_: stack subq instruction is too different from dwarf stack size ld: warning: object file (cvam_engine.o) was built for newer macOS version (13.0) than being linked (11.3) ld: warning: could not create compact unwind for _cvam_predict_em_: stack subq instruction is too different from dwarf stack size ld: warning: object file (quick_sort.o) was built for newer macOS version (13.0) than being linked (11.3) ld: warning: could not create compact unwind for _cvam_impute_freq_: stack subq instruction is too different from dwarf stack size ld: warning: object file (tabulate.o) was built for newer macOS version (13.0) than being linked (11.3) ld: warning: object file (matrix_methods.o) was built for newer macOS version (13.0) than being linked (11.3) ld: warning: could not create compact unwind for ___cvam_engine_MOD_create_estimate_objects.constprop.0: stack subq instruction is too different from dwarf stack size ld: warning: could not create compact unwind for ___cvam_engine_MOD_setup_lcmeas_workspace.constprop.0: stack subq instruction is too different from dwarf stack size ld: warning: could not create compact unwind for _cvam_impute_microdata_: stack subq instruction is too different from dwarf stack size ld: warning: could not create compact unwind for _cvam_lik_: stack subq instruction is too different from dwarf stack size ld: warning: could not create compact unwind for _cvam_logit_: stack subq instruction is too different from dwarf stack size ld: warning: could not create compact unwind for _cvam_logit_predict_: stack subq instruction is too different from dwarf stack size ld: warning: could not create compact unwind for _cvam_lcmeas_: stack subq instruction is too different from dwarf stack size ld: warning: could not create compact unwind for ___cvam_engine_MOD_run_cvam_lik: stack subq instruction is too different from dwarf stack size ld: warning: could not create compact unwind for ___cvam_engine_MOD_run_cvam_model: stack subq instruction is too different from dwarf stack size rm -f *.mod *.o gfortran -arch x86_64 -fPIC -Wall -g -O2 -c program_constants.f90 -o program_constants.o gfortran -arch x86_64 -fPIC -Wall -g -O2 -c error_handler.f90 -o error_handler.o gfortran -arch x86_64 -fPIC -Wall -g -O2 -c dynalloc.f90 -o dynalloc.o gfortran -arch x86_64 -fPIC -Wall -g -O2 -c quick_sort.f90 -o quick_sort.o quick_sort.f90:466:3: 466 | function toupper( sstr1, ilen ) result(sstr2) | ^ Warning: ‘toupper’ defined but not used [-Wunused-function] gfortran -arch x86_64 -fPIC -Wall -g -O2 -c tabulate.f90 -o tabulate.o gfortran -arch x86_64 -fPIC -Wall -g -O2 -c matrix_methods.f90 -o matrix_methods.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mathRC.c -o mathRC.o gfortran -arch x86_64 -fPIC -Wall -g -O2 -c mathRF77.f -o mathRF77.o gfortran -arch x86_64 -fPIC -Wall -g -O2 -c math_R.f90 -o math_R.o gfortran -arch x86_64 -fPIC -Wall -g -O2 -c math_funcs.f90 -o math_funcs.o gfortran -arch x86_64 -fPIC -Wall -g -O2 -c cvam_engine.f90 -o cvam_engine.o cvam_engine.f90:12060:3: 12060 | 800 call err_handle(err, 2, whichsub = subname, whichmod = modname ) | 1 Warning: Label 800 at (1) defined but not used [-Wunused-label] cvam_engine.f90:10691:3: 10691 | 800 call err_handle(err, 2, whichsub = subname, whichmod = modname ) | 1 Warning: Label 800 at (1) defined but not used [-Wunused-label] cvam_engine.f90:5401:22: 5401 | cest = work%estimates(i)%cell | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:5415:22: 5415 | cest = work%estimates(i)%cell | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:5625:25: 5625 | var_old = work%var(jj) | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:5682:25: 5682 | var_old = work%var(jj) | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:6821:22: 6821 | cest = work%estimates(i)%cell | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:6835:22: 6835 | cest = work%estimates(i)%cell | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:3570:18: 3570 | work%cell = 1 + work%cell_fixed_part + work%cell_random_part | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:3628:18: 3628 | work%cell = 1 + work%cell_fixed_part + work%cell_random_part | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:5535:22: 5535 | cest = work%estimates(i)%cell | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:5550:22: 5550 | cest = work%estimates(i)%cell | 1 Warning: Possible change of value in conversion from INTEGER(8) to INTEGER(4) at (1) [-Wconversion] cvam_engine.f90:12084:65: 12084 | integer(kind=our_int) :: cov_patt, posn, y, i, j, k, l, ii | 1 Warning: Unused variable ‘ii’ declared at (1) [-Wunused-variable] cvam_engine.f90:12006:14: 12006 | work, logit, mvcode, nancode, infcode, neginfcode, err ) & | 1 Warning: Unused dummy argument ‘work’ at (1) [-Wunused-dummy-argument] cvam_engine.f90:11644:61: 11644 | integer(kind=our_int) function get_pimat_big_logit( work, logit, & | 1 Warning: Unused dummy argument ‘work’ at (1) [-Wunused-dummy-argument] cvam_engine.f90:12967:52: 12967 | integer(kind=our_int) function get_lcmeas_params( lcmeas, params, & | ^ Warning: ‘get_lcmeas_params’ defined but not used [-Wunused-function] cvam_engine.f90:13012:55: 13012 | integer(kind=our_int) function update_lcmeas_params( lcmeas, & | ^ Warning: ‘update_lcmeas_params’ defined but not used [-Wunused-function] cvam_engine.f90:11806:64: 11806 | logit%max_diff_em = max( logit%max_diff_em, max_diff ) | ^ Warning: ‘max_diff’ may be used uninitialized [-Wmaybe-uninitialized] cvam_engine.f90:11714:49: 11714 | real(kind=our_dble) :: sum, rtmp, max_diff | ^ note: ‘max_diff’ was declared here cvam_engine.f90:10948:22: 10948 | if( .not. failed ) call err_handle(err, 1, & | ^ Warning: ‘failed’ may be used uninitialized [-Wmaybe-uninitialized] cvam_engine.f90:10812:45: 10812 | logical :: aborted, aborted_nr, failed, boundary | ^ note: ‘failed’ was declared here cvam_engine.f90:11480:52: 11480 | work%pred(i, logit%xcol(j)) | ^ Warning: ‘i’ may be used uninitialized [-Wmaybe-uninitialized] cvam_engine.f90:11409:26: 11409 | l, m, posnA, i, mvcode, ycol, size_mapset, ystar, jj | ^ note: ‘i’ was declared here gfortran -arch x86_64 -fPIC -Wall -g -O2 -c cvam.f90 -o cvam.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cvam_init.c -o cvam_init.o installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00LOCK-cvam/00new/cvam/libs ** generating debug symbols (dSYM) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/cvam.o: timestamp mismatch between object file (2023-04-08 16:05:34.965952523) and debug map (2023-04-08 16:04:54.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/cvam_engine.o: timestamp mismatch between object file (2023-04-08 16:05:30.003864093) and debug map (2023-04-08 16:04:49.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/cvam_init.o: timestamp mismatch between object file (2023-04-08 16:05:35.055781520) and debug map (2023-04-08 16:04:54.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/dynalloc.o: timestamp mismatch between object file (2023-04-08 16:04:56.417131206) and debug map (2023-04-08 16:04:09.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/error_handler.o: timestamp mismatch between object file (2023-04-08 16:04:55.853279830) and debug map (2023-04-08 16:04:09.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/mathRC.o: timestamp mismatch between object file (2023-04-08 16:04:59.197527083) and debug map (2023-04-08 16:04:13.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/mathRF77.o: timestamp mismatch between object file (2023-04-08 16:04:59.415249406) and debug map (2023-04-08 16:04:13.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/math_R.o: timestamp mismatch between object file (2023-04-08 16:04:59.997199528) and debug map (2023-04-08 16:04:14.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/math_funcs.o: timestamp mismatch between object file (2023-04-08 16:05:00.207784518) and debug map (2023-04-08 16:04:14.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/matrix_methods.o: timestamp mismatch between object file (2023-04-08 16:04:59.053148058) and debug map (2023-04-08 16:04:13.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/program_constants.o: timestamp mismatch between object file (2023-04-08 16:04:55.193354860) and debug map (2023-04-08 16:04:08.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/quick_sort.o: timestamp mismatch between object file (2023-04-08 16:04:56.876661955) and debug map (2023-04-08 16:04:10.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/tabulate.o: timestamp mismatch between object file (2023-04-08 16:04:57.421958463) and debug map (2023-04-08 16:04:11.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/cvam.o: timestamp mismatch between object file (2023-04-08 16:05:34.965952523) and debug map (2023-04-08 16:04:54.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/cvam_engine.o: timestamp mismatch between object file (2023-04-08 16:05:30.003864093) and debug map (2023-04-08 16:04:49.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/cvam_init.o: timestamp mismatch between object file (2023-04-08 16:05:35.055781520) and debug map (2023-04-08 16:04:54.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/dynalloc.o: timestamp mismatch between object file (2023-04-08 16:04:56.417131206) and debug map (2023-04-08 16:04:09.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/error_handler.o: timestamp mismatch between object file (2023-04-08 16:04:55.853279830) and debug map (2023-04-08 16:04:09.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/mathRC.o: timestamp mismatch between object file (2023-04-08 16:04:59.197527083) and debug map (2023-04-08 16:04:13.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/mathRF77.o: timestamp mismatch between object file (2023-04-08 16:04:59.415249406) and debug map (2023-04-08 16:04:13.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/math_R.o: timestamp mismatch between object file (2023-04-08 16:04:59.997199528) and debug map (2023-04-08 16:04:14.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/math_funcs.o: timestamp mismatch between object file (2023-04-08 16:05:00.207784518) and debug map (2023-04-08 16:04:14.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/matrix_methods.o: timestamp mismatch between object file (2023-04-08 16:04:59.053148058) and debug map (2023-04-08 16:04:13.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/program_constants.o: timestamp mismatch between object file (2023-04-08 16:04:55.193354860) and debug map (2023-04-08 16:04:08.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/quick_sort.o: timestamp mismatch between object file (2023-04-08 16:04:56.876661955) and debug map (2023-04-08 16:04:10.000000000) warning: /Volumes/Builds/packages/big-sur-x86_64/results/4.3/cvam.Rcheck/00_pkg_src/cvam/src/tabulate.o: timestamp mismatch between object file (2023-04-08 16:04:57.421958463) and debug map (2023-04-08 16:04:11.000000000) ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cvam)