* using log directory ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.3/coxme.Rcheck’
* using R version 4.3.2 (2023-10-31)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.3.1
* using session charset: UTF-8
* checking for file ‘coxme/DESCRIPTION’ ... OK
* this is package ‘coxme’ version ‘2.2-20’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘coxme’ can be installed ... [11s/16s] OK
See 'https://www.r-project.org/nosvn/R.check/r-oldrel-macos-x86_64/coxme-00install.html' for details.
* used C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/3s] OK
* checking whether the package can be unloaded cleanly ... [2s/3s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
* checking loading without being on the library search path ... [1s/2s] OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [8s/13s] OK
* checking Rd files ... [0s/1s] OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [3s/4s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [51s/90s] OK
  Running ‘brfit.R’ [3s/5s]
  Running ‘lmekin1.R’ [3s/5s]
  Comparing ‘lmekin1.Rout’ to ‘lmekin1.Rout.save’ ... OK
  Running ‘lmekin2.R’ [2s/3s]
  Comparing ‘lmekin2.Rout’ to ‘lmekin2.Rout.save’ ... OK
  Running ‘nest1.R’ [2s/2s]
  Comparing ‘nest1.Rout’ to ‘nest1.Rout.save’ ... OK
  Running ‘nest2.R’ [2s/3s]
  Comparing ‘nest2.Rout’ to ‘nest2.Rout.save’ ... OK
  Running ‘refine.R’ [2s/3s]
  Comparing ‘refine.Rout’ to ‘refine.Rout.save’ ... OK
  Running ‘refine1.R’ [2s/4s]
  Comparing ‘refine1.Rout’ to ‘refine1.Rout.save’ ... OK
  Running ‘refine2.R’ [2s/4s]
  Comparing ‘refine2.Rout’ to ‘refine2.Rout.save’ ... OK
  Running ‘refine3.R’ [2s/3s]
  Comparing ‘refine3.Rout’ to ‘refine3.Rout.save’ ... OK
  Running ‘shrink.R’ [2s/3s]
  Comparing ‘shrink.Rout’ to ‘shrink.Rout.save’ ... OK
  Running ‘slope1.R’ [7s/13s]
  Comparing ‘slope1.Rout’ to ‘slope1.Rout.save’ ... OK
  Running ‘slope2.R’ [3s/5s]
  Comparing ‘slope2.Rout’ to ‘slope2.Rout.save’ ... OK
  Running ‘slope3.R’ [3s/5s]
  Comparing ‘slope3.Rout’ to ‘slope3.Rout.save’ ... OK
  Running ‘slope4.R’ [6s/11s]
  Comparing ‘slope4.Rout’ to ‘slope4.Rout.save’ ... OK
  Running ‘strata1.R’ [2s/3s]
  Comparing ‘strata1.Rout’ to ‘strata1.Rout.save’ ... OK
  Running ‘test0.R’ [2s/3s]
  Comparing ‘test0.Rout’ to ‘test0.Rout.save’ ... OK
  Running ‘test1.R’ [2s/3s]
  Comparing ‘test1.Rout’ to ‘test1.Rout.save’ ... OK
  Running ‘test2.R’ [2s/3s]
  Comparing ‘test2.Rout’ to ‘test2.Rout.save’ ... OK
  Running ‘test3.R’ [2s/3s]
  Comparing ‘test3.Rout’ to ‘test3.Rout.save’ ... OK
  Running ‘test4.R’ [2s/3s]
  Comparing ‘test4.Rout’ to ‘test4.Rout.save’ ... OK
  Running ‘twoterm.R’ [2s/3s]
  Comparing ‘twoterm.Rout’ to ‘twoterm.Rout.save’ ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... [24s/39s] OK
  ‘coxme.Rnw’... [8s/15s] OK
  ‘laplace.Rnw’... [8s/12s] OK
  ‘lmekin.Rnw’... [6s/9s] OK
  ‘variance.Rnw’... [2s/3s] OK
* checking re-building of vignette outputs ... [43s/70s] OK
* checking PDF version of manual ... [8s/11s] OK
* DONE
Status: OK
* using check arguments '--no-clean-on-error '

* elapsed time (check, wall clock): 4:59