* installing *source* package ‘blaster’ ...
** package ‘blaster’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ReadFasta.cpp -o ReadFasta.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c TextReader.cpp -o TextReader.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c blast.cpp -o blast.o
In file included from ReadFasta.cpp:8:
In file included from ./FileFormat.h:In file included from blast.cpp:714:
:
In file included from ./FileFormat.h./Alnout/Writer.h:177:12::14:
 warning: unused variable 'match' [-Wunused-variable]
./Alnout/Writer.h:177:12:     bool   match;
           ^
warning: unused variable 'match' [-Wunused-variable]
    bool   match;
           ^
In file included from blast.cpp:10:
./Database/GlobalSearch.h:117:18: warning: variable 'length' set but not used [-Wunused-but-set-variable]
          size_t length = mDB.KmerLength();
                 ^
./Database/GlobalSearch.h:155:14: warning: unused variable 'rightQuery' [-Wunused-variable]
      size_t rightQuery, rightCandidate;
             ^
./Database/GlobalSearch.h:155:26: warning: unused variable 'rightCandidate' [-Wunused-variable]
      size_t rightQuery, rightCandidate;
                         ^
In file included from TextReader.cpp:2:
./Utils.h:9:13: warning: unused function 'UpcaseString' [-Wunused-function]
static void UpcaseString( std::string& str ) {
            ^
1 warning generated.
In file included from ReadFasta.cpp:8:
In file included from ./FileFormat.h:14:
In file included from ./Alnout/Writer.h:3:
In file included from ./Alnout/../Database/HitWriter.h:3:
In file included from ./Alnout/../Database/Search.h:3:
./Alnout/../Database/../Alignment/Cigar.h:144:22: warning: unused function 'operator<<' [-Wunused-function]
static std::ostream& operator<<( std::ostream& os, const Cigar& cigar ) {
                     ^
In file included from blast.cpp:7:
In file included from ./FileFormat.h:14:
In file included from ./Alnout/Writer.h:3:
In file included from ./Alnout/../Database/HitWriter.h:3:
In file included from ./Alnout/../Database/Search.h:3:
./Alnout/../Database/../Alignment/Cigar.h:144:22: warning: unused function 'operator<<' [-Wunused-function]
static std::ostream& operator<<( std::ostream& os, const Cigar& cigar ) {
                     ^
2 warnings generated.
5 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o blaster.so RcppExports.o ReadFasta.o TextReader.o blast.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/blaster.Rcheck/00LOCK-blaster/00new/blaster/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (blaster)