- using R version 4.3.3 (2024-02-29)
- using platform: x86_64-apple-darwin20 (64-bit)
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘Seurat/DESCRIPTION’ ... OK
- this is package ‘Seurat’ version ‘5.1.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... NOTE
Packages suggested but not available for checking:
'BPCells', 'monocle', 'presto'
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘Seurat’ can be installed ... [73s/74s] OK
See the install log for details.
- used C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
- used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
- used SDK: ‘MacOSX11.3.sdk’
- checking C++ specification ... OK
Not all R platforms support C++17
- checking installed package size ... NOTE
installed size is 11.2Mb
sub-directories of 1Mb or more:
R 2.0Mb
libs 8.3Mb
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [4s/7s] OK
- checking whether the package can be loaded with stated dependencies ... [5s/7s] OK
- checking whether the package can be unloaded cleanly ... [4s/7s] OK
- checking whether the namespace can be loaded with stated dependencies ... [4s/7s] OK
- checking whether the namespace can be unloaded cleanly ... [4s/8s] OK
- checking loading without being on the library search path ... [5s/9s] OK
- checking startup messages can be suppressed ... [4s/10s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [37s/63s] OK
- checking Rd files ... [6s/11s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking compiled code ... OK
- checking examples ... [14s/22s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [102s/177s] ERROR
Running ‘testthat.R’ [102s/176s]
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
11. │ ├─assertthat::assert_that(inherits(object, class), msg = msg)
12. │ │ └─assertthat::see_if(..., env = env, msg = msg)
13. │ │ ├─base::tryCatch(...)
14. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
15. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
16. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
17. │ │ └─base::eval(assertion, env)
18. │ │ └─base::eval(assertion, env)
19. │ └─base::inherits(object, class)
20. └─ParquetArrowReaderProperties$create()
21. └─arrow:::parquet___arrow___ArrowReaderProperties__Make(isTRUE(use_threads))
[ FAIL 2 | WARN 1 | SKIP 29 | PASS 673 ]
Error: Test failures
Execution halted
- checking PDF version of manual ... [18s/32s] OK
- DONE
Status: 1 ERROR, 2 NOTEs
- using check arguments '--no-clean-on-error '