* installing *source* package ‘Racmacs’ ...
** package ‘Racmacs’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c Racmacs_wrappers.cpp -o Racmacs_wrappers.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c Racmacs_wrappers_antigens.cpp -o Racmacs_wrappers_antigens.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c Racmacs_wrappers_optimizations.cpp -o Racmacs_wrappers_optimizations.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c Racmacs_wrappers_plotspec.cpp -o Racmacs_wrappers_plotspec.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c Racmacs_wrappers_sera.cpp -o Racmacs_wrappers_sera.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ac_bootstrap.cpp -o ac_bootstrap.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ac_dimension_test.cpp -o ac_dimension_test.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ac_errorlines.cpp -o ac_errorlines.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ac_hemi_test.cpp -o ac_hemi_test.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ac_matching.cpp -o ac_matching.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ac_merge.cpp -o ac_merge.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ac_move_trapped_points.cpp -o ac_move_trapped_points.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ac_optim_map_stress.cpp -o ac_optim_map_stress.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ac_optimization.cpp -o ac_optimization.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ac_optimize_ag_reactivity.cpp -o ac_optimize_ag_reactivity.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ac_stress.cpp -o ac_stress.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ac_stress_blobs.cpp -o ac_stress_blobs.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ac_titers.cpp -o ac_titers.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ac_utils.cpp -o ac_utils.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c acmap_map.cpp -o acmap_map.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c acmap_optimization.cpp -o acmap_optimization.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c acmap_point.cpp -o acmap_point.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c acmap_titers.cpp -o acmap_titers.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c json_assert.cpp -o json_assert.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c json_read_to_acmap.cpp -o json_read_to_acmap.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c json_write_from_acmap.cpp -o json_write_from_acmap.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c procrustes.cpp -o procrustes.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c utils.cpp -o utils.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c utils_error.cpp -o utils_error.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c utils_euc_dist.cpp -o utils_euc_dist.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c utils_geometry.cpp -o utils_geometry.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c utils_interpolation.cpp -o utils_interpolation.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DSTRICT_R_HEADERS -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEnsmallen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rapidjsonr/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c utils_transformation.cpp -o utils_transformation.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o Racmacs.so Racmacs_wrappers.o Racmacs_wrappers_antigens.o Racmacs_wrappers_optimizations.o Racmacs_wrappers_plotspec.o Racmacs_wrappers_sera.o RcppExports.o ac_bootstrap.o ac_dimension_test.o ac_errorlines.o ac_hemi_test.o ac_matching.o ac_merge.o ac_move_trapped_points.o ac_optim_map_stress.o ac_optimization.o ac_optimize_ag_reactivity.o ac_stress.o ac_stress_blobs.o ac_titers.o ac_utils.o acmap_map.o acmap_optimization.o acmap_point.o acmap_titers.o json_assert.o json_read_to_acmap.o json_write_from_acmap.o procrustes.o utils.o utils_error.o utils_euc_dist.o utils_geometry.o utils_interpolation.o utils_transformation.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/Racmacs.Rcheck/00LOCK-Racmacs/00new/Racmacs/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Racmacs)