* installing *source* package ‘Phase12Compare’ ... ** package ‘Phase12Compare’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c SPSOCODE.cpp -o SPSOCODE.o In file included from SPSOCODE.cpp:3: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ SPSOCODE.cpp:676:7: warning: unused variable 'm' [-Wunused-variable] int m=0; ^ SPSOCODE.cpp:1080:10: warning: unused variable 'p' [-Wunused-variable] double p=0; ^ SPSOCODE.cpp:1081:10: warning: unused variable 'pu' [-Wunused-variable] double pu=0; ^ SPSOCODE.cpp:1082:10: warning: unused variable 'pl' [-Wunused-variable] double pl=0; ^ SPSOCODE.cpp:1083:10: warning: unused variable 'tol' [-Wunused-variable] double tol=.005; ^ SPSOCODE.cpp:1109:7: warning: unused variable 'Count' [-Wunused-variable] int Count=0; ^ SPSOCODE.cpp:1119:7: warning: unused variable 'nREP' [-Wunused-variable] int nREP=0; ^ SPSOCODE.cpp:1162:10: warning: unused variable 'min1' [-Wunused-variable] double min1=0; ^ SPSOCODE.cpp:1990:7: warning: unused variable 'Count' [-Wunused-variable] int Count=0; ^ SPSOCODE.cpp:2000:7: warning: unused variable 'nREP' [-Wunused-variable] int nREP=0; ^ SPSOCODE.cpp:2043:10: warning: unused variable 'min1' [-Wunused-variable] double min1=0; ^ SPSOCODE.cpp:2821:10: warning: unused variable 'phivar' [-Wunused-variable] double phivar=Hypervars[2]; //Variance parameter for frailty correlations ^ SPSOCODE.cpp:2822:10: warning: variable 'phi' set but not used [-Wunused-but-set-variable] double phi=0; ^ SPSOCODE.cpp:2893:10: warning: unused variable 'epprop' [-Wunused-variable] double epprop = 0; //proposal values for epsilon ^ SPSOCODE.cpp:2942:10: warning: unused variable 'epEC' [-Wunused-variable] double epEC = 1; ^ SPSOCODE.cpp:2943:10: warning: unused variable 'epTC' [-Wunused-variable] double epTC = 1; ^ SPSOCODE.cpp:2982:10: warning: unused variable 'holdmin' [-Wunused-variable] double holdmin=1; ^ SPSOCODE.cpp:3744:7: warning: unused variable 'Stopped' [-Wunused-variable] int Stopped=0; ^ SPSOCODE.cpp:3791:7: warning: unused variable 'Count' [-Wunused-variable] int Count=0; ^ SPSOCODE.cpp:3801:7: warning: unused variable 'nREP' [-Wunused-variable] int nREP=0; ^ SPSOCODE.cpp:3824:7: warning: unused variable 'm' [-Wunused-variable] int m=0; ^ SPSOCODE.cpp:3841:7: warning: variable 'STOPPED' set but not used [-Wunused-but-set-variable] int STOPPED=0; ^ SPSOCODE.cpp:3842:7: warning: unused variable 'i' [-Wunused-variable] int i=0; ^ SPSOCODE.cpp:3844:10: warning: unused variable 'min1' [-Wunused-variable] double min1=0; ^ SPSOCODE.cpp:3848:7: warning: unused variable 'nRep' [-Wunused-variable] int nRep=0; ^ SPSOCODE.cpp:4222:7: warning: unused variable 'Stopped' [-Wunused-variable] int Stopped=0; ^ SPSOCODE.cpp:4240:10: warning: unused variable 'p' [-Wunused-variable] double p=0; ^ SPSOCODE.cpp:4241:10: warning: unused variable 'pu' [-Wunused-variable] double pu=0; ^ SPSOCODE.cpp:4242:10: warning: unused variable 'pl' [-Wunused-variable] double pl=0; ^ SPSOCODE.cpp:4243:10: warning: unused variable 'tol' [-Wunused-variable] double tol=.005; ^ SPSOCODE.cpp:4258:7: warning: unused variable 'Count' [-Wunused-variable] int Count=0; ^ SPSOCODE.cpp:4268:7: warning: unused variable 'nREP' [-Wunused-variable] int nREP=0; ^ SPSOCODE.cpp:4294:7: warning: unused variable 'm' [-Wunused-variable] int m=0; ^ SPSOCODE.cpp:4311:7: warning: variable 'STOPPED' set but not used [-Wunused-but-set-variable] int STOPPED=0; ^ SPSOCODE.cpp:4312:7: warning: unused variable 'i' [-Wunused-variable] int i=0; ^ SPSOCODE.cpp:4314:10: warning: unused variable 'min1' [-Wunused-variable] double min1=0; ^ SPSOCODE.cpp:4318:7: warning: unused variable 'nRep' [-Wunused-variable] int nRep=0; ^ 40 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o Phase12Compare.so RcppExports.o SPSOCODE.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/Phase12Compare.Rcheck/00LOCK-Phase12Compare/00new/Phase12Compare/libs ** generating debug symbols (dSYM) ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Phase12Compare)