* installing *source* package ‘PLNmodels’ ... ** package ‘PLNmodels’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/nloptr/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/nloptr/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lambertW.cpp -o lambertW.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/nloptr/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c nlopt_wrapper.cpp -o nlopt_wrapper.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/nloptr/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c optim_diag_cov.cpp -o optim_diag_cov.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/nloptr/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c optim_fixed_cov.cpp -o optim_fixed_cov.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/nloptr/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c optim_full_cov.cpp -o optim_full_cov.o nlopt_wrapper.cpp:148:24: warning: lambda capture 'check' is not used [-Wunused-lambda-capture] auto f_and_grad = [check](const double * x, double * grad) -> double { ^~~~~ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/nloptr/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c optim_genet_cov.cpp -o optim_genet_cov.o 1 warning generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/nloptr/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c optim_rank_cov.cpp -o optim_rank_cov.o optim_full_cov.cpp:68:60: warning: lambda capture 'w_bar' is not used [-Wunused-lambda-capture] auto objective_and_grad = [&metadata, &Y, &X, &O, &w, &w_bar](const double * params, double * grad) -> double { ~~~^~~~~ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/nloptr/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c optim_spherical.cpp -o optim_spherical.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/nloptr/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c optim_zi-pln.cpp -o optim_zi-pln.o 1 warning generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/nloptr/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c packing.cpp -o packing.o optim_zi-pln.cpp:103:49: warning: lambda capture 'R' is not used [-Wunused-lambda-capture] auto objective_and_grad = [&metadata, &X0, &R, &Xt_R](const double * params, double * grad) -> double { ~~~^ optim_zi-pln.cpp:208:26: warning: lambda capture 'X' is not used [-Wunused-lambda-capture] [&metadata, &Y, &X, &O_S2, &R, &X_B, &Omega](const double * params, double * grad) -> double { ~~~^ 2 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o PLNmodels.so RcppExports.o lambertW.o nlopt_wrapper.o optim_diag_cov.o optim_fixed_cov.o optim_full_cov.o optim_genet_cov.o optim_rank_cov.o optim_spherical.o optim_zi-pln.o packing.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/PLNmodels.Rcheck/00LOCK-PLNmodels/00new/PLNmodels/libs ** generating debug symbols (dSYM) ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Note: wrong number of arguments to 'sqrt' Note: wrong number of arguments to 'sqrt' ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PLNmodels)