* installing *source* package ‘GiRaF’ ... ** package ‘GiRaF’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using C++11 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lattice.cpp -o lattice.o clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_module.cpp -o rcpp_module.o clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c recursion.cpp -o recursion.o clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I../inst/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sampler.cpp -o sampler.o In file included from recursion.cpp:1: In file included from ../inst/include/GiRaF.hpp:17: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/scoped_ptr.hpp:13: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr' is deprecated [-Wdeprecated-declarations] explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/adjacency_list.hpp:408:18: note: in instantiation of template class 'boost::scoped_ptr' requested here property_ptr m_property; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/properties.hpp:212:40: note: in instantiation of template class 'boost::adjacency_list, boost::property>>>>>, boost::property>>>' requested here typename return_void< typename Graph::graph_tag >::type > ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/properties.hpp:226:42: note: during template argument deduction for class template partial specialization 'graph_tag_or_void::type>' [with Graph = boost::adjacency_list, boost::property>>>>>, boost::property>>>] : vertex_property_selector< typename graph_tag_or_void< Graph >::type >:: ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/properties.hpp:226:42: note: in instantiation of template class 'boost::detail::graph_tag_or_void, boost::property>>>>>, boost::property>>>>' requested here /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/properties.hpp:235:3: note: in instantiation of template class 'boost::detail::vertex_property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here : mpl::if_< is_same< typename detail::property_kind_from_graph< Graph, ^ ../inst/include/GiRaF.hpp:50:16: note: in instantiation of template class 'boost::property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here typedef boost::property_map ::type VertexMap; ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1851:28: note: 'auto_ptr' has been explicitly marked deprecated here class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1046:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1035:48: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) ^ In file included from sampler.cpp:1: In file included from ../inst/include/GiRaF.hpp:17: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/scoped_ptr.hpp:13: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr' is deprecated [-Wdeprecated-declarations] explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/adjacency_list.hpp:408:18: note: in instantiation of template class 'boost::scoped_ptr' requested here property_ptr m_property; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/properties.hpp:212:40: note: in instantiation of template class 'boost::adjacency_list, boost::property>>>>>, boost::property>>>' requested here typename return_void< typename Graph::graph_tag >::type > ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/properties.hpp:226:42: note: during template argument deduction for class template partial specialization 'graph_tag_or_void::type>' [with Graph = boost::adjacency_list, boost::property>>>>>, boost::property>>>] : vertex_property_selector< typename graph_tag_or_void< Graph >::type >:: ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/properties.hpp:226:42: note: in instantiation of template class 'boost::detail::graph_tag_or_void, boost::property>>>>>, boost::property>>>>' requested here /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/properties.hpp:235:3: note: in instantiation of template class 'boost::detail::vertex_property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here : mpl::if_< is_same< typename detail::property_kind_from_graph< Graph, ^ ../inst/include/GiRaF.hpp:50:16: note: in instantiation of template class 'boost::property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here typedef boost::property_map ::type VertexMap; ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1851:28: note: 'auto_ptr' has been explicitly marked deprecated here class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1046:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1035:48: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) ^ In file included from lattice.cpp:1: In file included from ../inst/include/GiRaF.hpp:17: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/scoped_ptr.hpp:13: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr' is deprecated [-Wdeprecated-declarations] explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/adjacency_list.hpp:408:18: note: in instantiation of template class 'boost::scoped_ptr' requested here property_ptr m_property; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/properties.hpp:212:40: note: in instantiation of template class 'boost::adjacency_list, boost::property>>>>>, boost::property>>>' requested here typename return_void< typename Graph::graph_tag >::type > ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/properties.hpp:226:42: note: during template argument deduction for class template partial specialization 'graph_tag_or_void::type>' [with Graph = boost::adjacency_list, boost::property>>>>>, boost::property>>>] : vertex_property_selector< typename graph_tag_or_void< Graph >::type >:: ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/properties.hpp:226:42: note: in instantiation of template class 'boost::detail::graph_tag_or_void, boost::property>>>>>, boost::property>>>>' requested here /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/properties.hpp:235:3: note: in instantiation of template class 'boost::detail::vertex_property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here : mpl::if_< is_same< typename detail::property_kind_from_graph< Graph, ^ ../inst/include/GiRaF.hpp:50:16: note: in instantiation of template class 'boost::property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here typedef boost::property_map ::type VertexMap; ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1851:28: note: 'auto_ptr' has been explicitly marked deprecated here class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1046:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1035:48: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) ^ In file included from rcpp_module.cpp:1: In file included from ../inst/include/GiRaF.hpp:17: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/adjacency_list.hpp:22: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/scoped_ptr.hpp:13: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr' is deprecated [-Wdeprecated-declarations] explicit scoped_ptr( std::auto_ptr p ) BOOST_SP_NOEXCEPT : px( p.release() ) ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/adjacency_list.hpp:408:18: note: in instantiation of template class 'boost::scoped_ptr' requested here property_ptr m_property; ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/properties.hpp:212:40: note: in instantiation of template class 'boost::adjacency_list, boost::property>>>>>, boost::property>>>' requested here typename return_void< typename Graph::graph_tag >::type > ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/properties.hpp:226:42: note: during template argument deduction for class template partial specialization 'graph_tag_or_void::type>' [with Graph = boost::adjacency_list, boost::property>>>>>, boost::property>>>] : vertex_property_selector< typename graph_tag_or_void< Graph >::type >:: ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/properties.hpp:226:42: note: in instantiation of template class 'boost::detail::graph_tag_or_void, boost::property>>>>>, boost::property>>>>' requested here /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/graph/properties.hpp:235:3: note: in instantiation of template class 'boost::detail::vertex_property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here : mpl::if_< is_same< typename detail::property_kind_from_graph< Graph, ^ ../inst/include/GiRaF.hpp:50:16: note: in instantiation of template class 'boost::property_map, boost::property>>>>>, boost::property>>>, boost::vertex_color_t>' requested here typedef boost::property_map ::type VertexMap; ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1851:28: note: 'auto_ptr' has been explicitly marked deprecated here class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1046:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11' # define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED ^ /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__config:1035:48: note: expanded from macro '_LIBCPP_DEPRECATED' # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) ^ 1 warning generated. 1 warning generated. 1 warning generated. 1 warning generated. clang++ -arch x86_64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o GiRaF.so lattice.o rcpp_module.o recursion.o sampler.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/GiRaF.Rcheck/00LOCK-GiRaF/00new/GiRaF/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GiRaF)