* using log directory ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.3/DOBAD.Rcheck’ * using R version 4.3.0 beta (2023-04-08 r84203) * using platform: x86_64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.3 (clang-1403.0.22.14.1) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.3 * using session charset: UTF-8 * checking for file ‘DOBAD/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DOBAD’ version ‘1.0.6’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DOBAD’ can be installed ... [7s/9s] OK See 'https://www.r-project.org/nosvn/R.check/r-oldrel-macos-x86_64/DOBAD-00install.html' for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/2s] OK * checking whether the package can be loaded with stated dependencies ... [1s/2s] OK * checking whether the package can be unloaded cleanly ... [1s/2s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/2s] OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [9s/11s] OK * checking Rd files ... [1s/1s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'add.joint.mean.many': ‘all.cond.mean.PO’ ‘all.cond.mean2.PO’ The \usage entries for S3 methods should use the \method markup and not their full name. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [2s/2s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... [48s/68s] OK ‘BD_EM.Rnw’... [39s/55s] OK ‘BD_EM_wImmig.Rnw’... [4s/6s] OK ‘BD_MCMC.Rnw’... [2s/3s] OK ‘sim_condBD.Rnw’... [4s/5s] OK * checking re-building of vignette outputs ... [58s/80s] NOTE Error(s) in re-building vignettes: --- re-building ‘BD_EM.Rnw’ using Sweave Loading required package: numDeriv Error: processing vignette 'BD_EM.Rnw' failed with diagnostics: Running 'texi2dvi' on 'BD_EM.tex' failed. LaTeX errors: ! LaTeX Error: File `versions.sty' not found. Type X to quit or to proceed, or enter new name. (Default extension: sty) ! Emergency stop. l.19 \usepackage {amsmath}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘BD_EM.Rnw’ --- re-building ‘BD_EM_wImmig.Rnw’ using Sweave Loading required package: numDeriv Error: processing vignette 'BD_EM_wImmig.Rnw' failed with diagnostics: Running 'texi2dvi' on 'BD_EM_wImmig.tex' failed. LaTeX errors: ! LaTeX Error: File `versions.sty' not found. Type X to quit or to proceed, or enter new name. (Default extension: sty) ! Emergency stop. l.20 \usepackage {amsmath}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘BD_EM_wImmig.Rnw’ --- re-building ‘BD_MCMC.Rnw’ using Sweave Loading required package: numDeriv Error: processing vignette 'BD_MCMC.Rnw' failed with diagnostics: Running 'texi2dvi' on 'BD_MCMC.tex' failed. LaTeX errors: ! LaTeX Error: File `versions.sty' not found. Type X to quit or to proceed, or enter new name. (Default extension: sty) ! Emergency stop. l.20 \usepackage {amsmath}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘BD_MCMC.Rnw’ --- re-building ‘sim_condBD.Rnw’ using Sweave Loading required package: numDeriv Error: processing vignette 'sim_condBD.Rnw' failed with diagnostics: Running 'texi2dvi' on 'sim_condBD.tex' failed. LaTeX errors: ! LaTeX Error: File `versions.sty' not found. Type X to quit or to proceed, or enter new name. (Default extension: sty) ! Emergency stop. l.20 \usepackage {amsmath}^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘sim_condBD.Rnw’ SUMMARY: processing the following files failed: ‘BD_EM.Rnw’ ‘BD_EM_wImmig.Rnw’ ‘BD_MCMC.Rnw’ ‘sim_condBD.Rnw’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [5s/7s] OK * DONE Status: 2 NOTEs * using check arguments '--no-clean-on-error ' * elapsed time (check, wall clock): 3:37