* using log directory ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.3/DBR.Rcheck’ * using R version 4.3.0 beta (2023-04-08 r84203) * using platform: x86_64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.3 (clang-1403.0.22.14.1) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.3 * using session charset: UTF-8 * checking for file ‘DBR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DBR’ version ‘1.4.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DBR’ can be installed ... [2s/2s] OK See 'https://www.r-project.org/nosvn/R.check/r-oldrel-macos-x86_64/DBR-00install.html' for details. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking startup messages can be suppressed ... [0s/0s] OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s/2s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [9s/13s] OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... [13s/19s] OK ‘DBR.Rnw’ using ‘UTF-8’... [13s/19s] OK * checking re-building of vignette outputs ... [21s/28s] NOTE Error(s) in re-building vignettes: --- re-building ‘DBR.Rnw’ using Sweave DBR 1.4.1 Bayesian Discretized Beta Regression for the Analysis of Ratings Data Warning in cor.test.default(pain$severity, pain$interference, method = "spearman") : Cannot compute exact p-value with ties Warning in cor.test.default(pain$age, pain$interference, method = "spearman") : Cannot compute exact p-value with ties Warning in ks.test.default(pred_sample, pain$interference) : p-value will be approximate in the presence of ties Error: processing vignette 'DBR.Rnw' failed with diagnostics: Running 'texi2dvi' on 'DBR.tex' failed. LaTeX errors: ! LaTeX Error: File `breqn.sty' not found. Type X to quit or to proceed, or enter new name. (Default extension: sty) ! Emergency stop. l.18 \usepackage {atbegshi}% http://ctan.org/pkg/atbegshi^^M ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building ‘DBR.Rnw’ SUMMARY: processing the following file failed: ‘DBR.Rnw’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [4s/4s] OK * DONE Status: 1 NOTE * using check arguments '--no-clean-on-error ' * elapsed time (check, wall clock): 1:25