* installing *source* package ‘pedmod’ ... ** package ‘pedmod’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 13.0.0 (clang-1300.0.29.30)’ using Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’ using C++ compiler: ‘Apple clang version 13.0.0 (clang-1300.0.29.30)’ using C++17 using SDK: ‘MacOSX11.3.sdk’ clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c C_FORTRAN_interface.c -o C_FORTRAN_interface.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cdfaprx.cpp -o cdfaprx.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c find-tilting-param.cpp -o find-tilting-param.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c graph-partitioning.cpp -o graph-partitioning.o /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c mvt.f -o mvt.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c norm-cdf-approx.cpp -o norm-cdf-approx.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pedigree-ll.cpp -o pedigree-ll.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c qnorm.c -o qnorm.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c qtnorm.cpp -o qtnorm.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c r-api.cpp -o r-api.o In file included from r-api.cpp:3: ./openmp-exception_ptr.h:12:8: warning: private field 'is_set' is not used [-Wunused-private-field] bool is_set = false; ^ 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sobol.cpp -o sobol.o sobol.cpp:78:12: warning: unused function 'ibits' [-Wunused-function] inline int ibits ^ 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-cdfaprx.cpp -o test-cdfaprx.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-find-tilting-param.cpp -o test-find-tilting-param.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-pedigree-ll.cpp -o test-pedigree-ll.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-qtnorm.cpp -o test-qtnorm.o test-qtnorm.cpp:6:13: warning: unused function 'is_minus_inf' [-Wunused-function] inline bool is_minus_inf(double const x){ ^ test-qtnorm.cpp:9:13: warning: unused function 'is_pos_inf' [-Wunused-function] inline bool is_pos_inf(double const x){ ^ 2 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-runner.cpp -o test-runner.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/BH/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c threat-safe-random.cpp -o threat-safe-random.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o pedmod.so C_FORTRAN_interface.o RcppExports.o cdfaprx.o find-tilting-param.o graph-partitioning.o mvt.o norm-cdf-approx.o pedigree-ll.o qnorm.o qtnorm.o r-api.o sobol.o test-cdfaprx.o test-find-tilting-param.o test-pedigree-ll.o test-qtnorm.o test-runner.o threat-safe-random.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-arm64/results/4.3/pedmod.Rcheck/00LOCK-pedmod/00new/pedmod/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pedmod)