* installing *source* package ‘pcaPP’ ... ** package ‘pcaPP’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c L1Median_HoCr.cpp -o L1Median_HoCr.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c L1Median_VardiZhang.cpp -o L1Median_VardiZhang.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ML_meal.cpp -o ML_meal.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ML_package.cpp -o ML_package.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ML_passrng.cpp -o ML_passrng.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c PCAgrid.cpp -o PCAgrid.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c PCAproj.cpp -o PCAproj.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R_meal.cpp -o R_meal.o In file included from R_meal.cpp:29: ./R_meal.h:26:17: warning: using directive refers to implicitly-defined namespace 'std' using namespace std; ^ 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R_meal_BLAS.cpp -o R_meal_BLAS.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R_package.cpp -o R_package.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cov.kendall.cpp -o cov.kendall.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c hess.cpp -o hess.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c l1median.cpp -o l1median.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c outSDo.cpp -o outSDo.o outSDo.cpp:106:10: warning: variable 'dDiff' set but not used [-Wunused-but-set-variable] double dDiff = 0, dCurMaha ; ^ 1 warning generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pcaPP.cpp -o pcaPP.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pcaPP_init.c -o pcaPP_init.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c qnn.cpp -o qnn.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DR_PACKAGE_FILE -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c smat.cpp -o smat.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o pcaPP.so L1Median_HoCr.o L1Median_VardiZhang.o ML_meal.o ML_package.o ML_passrng.o PCAgrid.o PCAproj.o R_meal.o R_meal_BLAS.o R_package.o cov.kendall.o hess.o l1median.o outSDo.o pcaPP.o pcaPP_init.o qnn.o smat.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: could not create compact unwind for ___emutls_get_address: registers 23 and 24 not saved contiguously in frame installing to /Volumes/Builds/packages/big-sur-arm64/results/4.3/pcaPP.Rcheck/00LOCK-pcaPP/00new/pcaPP/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pcaPP)