* installing *source* package ‘mmcif’ ... ** package ‘mmcif’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 13.0.0 (clang-1300.0.29.30)’ using Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’ using C++ compiler: ‘Apple clang version 13.0.0 (clang-1300.0.29.30)’ using C++17 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R-interface.cpp -o R-interface.o In file included from R-interface.cpp:1: In file included from ./arma-wrap.h:17: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bases.cpp -o bases.o In file included from bases.cpp:1: In file included from ./bases.h:4: In file included from ./arma-wrap.h:17: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c create-pair.cpp -o create-pair.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fast-commutation.cpp -o fast-commutation.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ghq.cpp -o ghq.o In file included from ghq.cpp:1: In file included from ./ghq.h:5: In file included from ./arma-wrap.h:17: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c integrand-cond-pbvn.cpp -o integrand-cond-pbvn.o In file included from integrand-cond-pbvn.cpp:1: In file included from ./integrand-cond-pbvn.h:4: In file included from ./ghq.h:5: In file included from ./arma-wrap.h:17: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c integrand-mixed-mult-logit-term.cpp -o integrand-mixed-mult-logit-term.o In file included from integrand-mixed-mult-logit-term.cpp:1: In file included from ./integrand-mixed-mult-logit-term.h:4: In file included from ./ghq.h:5: In file included from ./arma-wrap.h:17: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c integrand-probit-term.cpp -o integrand-probit-term.o In file included from integrand-probit-term.cpp:1: In file included from ./integrand-probit-term.h:4: In file included from ./ghq.h:5: In file included from ./arma-wrap.h:17: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mcif-logLik.cpp -o mcif-logLik.o In file included from mcif-logLik.cpp:1: In file included from ./mmcif-logLik.h:4: In file included from ./ghq.h:5: In file included from ./arma-wrap.h:17: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mmcif-logLik.cpp -o mmcif-logLik.o In file included from mmcif-logLik.cpp:2: In file included from ./mmcif-logLik.h:4: In file included from ./ghq.h:5: In file included from ./arma-wrap.h:17: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ 3 warnings generated. /opt/gfortran/bin/gfortran -arch arm64 -fPIC -Wall -g -O2 -c mvbvu.f -o mvbvu.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c norm-cdf-fortran.c -o norm-cdf-fortran.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c qnorm.c -o qnorm.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-bases.cpp -o test-bases.o In file included from test-bases.cpp:2: In file included from ./bases.h:4: In file included from ./arma-wrap.h:17: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-ghq.cpp -o test-ghq.o In file included from test-ghq.cpp:1: In file included from ./ghq.h:5: In file included from ./arma-wrap.h:17: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-integrand-cond-pbvn.cpp -o test-integrand-cond-pbvn.o In file included from test-integrand-cond-pbvn.cpp:2: In file included from ./integrand-cond-pbvn.h:4: In file included from ./ghq.h:5: In file included from ./arma-wrap.h:17: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-integrand-mixed-mult-logit-term.cpp -o test-integrand-mixed-mult-logit-term.o In file included from test-integrand-mixed-mult-logit-term.cpp:1: In file included from ./integrand-mixed-mult-logit-term.h:4: In file included from ./ghq.h:5: In file included from ./arma-wrap.h:17: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-integrand-probit-term.cpp -o test-integrand-probit-term.o In file included from test-integrand-probit-term.cpp:1: In file included from ./integrand-probit-term.h:4: In file included from ./ghq.h:5: In file included from ./arma-wrap.h:17: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-log-cholesky.cpp -o test-log-cholesky.o In file included from test-log-cholesky.cpp:2: In file included from ./log-cholesky.h:3: In file included from ./arma-wrap.h:17: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-lp-mmcif.cpp -o test-lp-mmcif.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-mcif-logLik.cpp -o test-mcif-logLik.o In file included from test-mcif-logLik.cpp:1: In file included from ./mmcif-logLik.h:4: In file included from ./ghq.h:5: In file included from ./arma-wrap.h:17: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-mmcif-logLik.cpp -o test-mmcif-logLik.o In file included from test-mmcif-logLik.cpp:2: In file included from ./mmcif-logLik.h:4: In file included from ./ghq.h:5: In file included from ./arma-wrap.h:17: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-mmcif-misc.cpp -o test-mmcif-misc.o In file included from test-mmcif-misc.cpp:1: In file included from ./mmcif-misc.h:5: In file included from ./arma-wrap.h:17: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo.h:29: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57: In file included from /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo:26: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:338:11: warning: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed [-W#pragma-messages] #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:343:13: warning: INFO: suggest to use ARMA_WARN_LEVEL option instead [-W#pragma-messages] #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") ^ /Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:346:11: warning: INFO: see the documentation for details [-W#pragma-messages] #pragma message ("INFO: see the documentation for details") ^ 3 warnings generated. clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-param-indexer.cpp -o test-param-indexer.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-pbvn.cpp -o test-pbvn.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-runner.cpp -o test-runner.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/testthat/include' -I'/Volumes/Builds/packages/big-sur-arm64/Rlib/4.3/psqn/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c wmem.cpp -o wmem.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o mmcif.so R-interface.o RcppExports.o bases.o create-pair.o fast-commutation.o ghq.o integrand-cond-pbvn.o integrand-mixed-mult-logit-term.o integrand-probit-term.o mcif-logLik.o mmcif-logLik.o mvbvu.o norm-cdf-fortran.o qnorm.o test-bases.o test-ghq.o test-integrand-cond-pbvn.o test-integrand-mixed-mult-logit-term.o test-integrand-probit-term.o test-log-cholesky.o test-lp-mmcif.o test-mcif-logLik.o test-mmcif-logLik.o test-mmcif-misc.o test-param-indexer.o test-pbvn.o test-runner.o wmem.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: could not create compact unwind for _mvbvu_: registers 78 and 79 not saved contiguously in frame installing to /Volumes/Builds/packages/big-sur-arm64/results/4.3/mmcif.Rcheck/00LOCK-mmcif/00new/mmcif/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mmcif)