* installing *source* package 'rcontroll' ...
** package 'rcontroll' successfully unpacked and MD5 sums checked
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
using C++ compiler: 'g++.exe (GCC) 13.2.0'
make[1]: Entering directory '/d/temp/RtmpeQGEj8/R.INSTALLf450fa1547/rcontroll/src'
rm -f rcontroll.dll RcppExports.o troll_rcpp.o
"D:/RCompile/recent/R/bin/x64/Rscript.exe" --vanilla "../tools/winlibs.R" 2.7
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I ../windows/gsl-2.7/include  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R/include" -DNDEBUG -I ../windows/gsl-2.7/include  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppGSL/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c troll_rcpp.cpp -o troll_rcpp.o
troll_rcpp.cpp: In function 'std::string GetParameter(std::string&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&)':
troll_rcpp.cpp:1169:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
 1169 |   while(parameter_index < parameter_names.size() && parameter_names[parameter_index] != parameter_name) parameter_index++;
      |         ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
troll_rcpp.cpp:1171:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
 1171 |   if(parameter_index < parameter_names.size()) parameter_value = parameter_values[parameter_index];
      |      ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
troll_rcpp.cpp: In function 'void OutputCrownSliced(int, int, int, std::vector<float>&)':
troll_rcpp.cpp:3413:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<float>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
 3413 |     for(int i = 0; i < output_statistics.size();i++){
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~
In copy constructor 'Species::Species(const Species&)',
    inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Species; _Args = {const Species&}; _Tp = Species]' at D:/rtools44/x86_64-w64-mingw32.static.posix/lib/gcc/x86_64-w64-mingw32.static.posix/13.2.0/include/c++/bits/new_allocator.h:187:4,
    inlined from 'static void std::allocator_traits<std::allocator<_Tp1> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = Species; _Args = {const Species&}; _Tp = Species]' at D:/rtools44/x86_64-w64-mingw32.static.posix/lib/gcc/x86_64-w64-mingw32.static.posix/13.2.0/include/c++/bits/alloc_traits.h:537:17,
    inlined from 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Species; _Alloc = std::allocator<Species>]' at D:/rtools44/x86_64-w64-mingw32.static.posix/lib/gcc/x86_64-w64-mingw32.static.posix/13.2.0/include/c++/bits/stl_vector.h:1283:30,
    inlined from 'void ReadInputSpecies()' at troll_rcpp.cpp:4176:16:
troll_rcpp.cpp:558:7: warning: 'species_dummy.Species::s_nbext' may be used uninitialized [-Wmaybe-uninitialized]
  558 | class Species {
      |       ^~~~~~~
troll_rcpp.cpp: In function 'void ReadInputSpecies()':
troll_rcpp.cpp:4175:13: note: 'species_dummy' declared here
 4175 |     Species species_dummy;  // !!!: currently, species at 0 is not initialized, for legacy reasons, maybe to change
      |             ^~~~~~~~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o rcontroll.dll tmp.def RcppExports.o troll_rcpp.o -L ../windows/gsl-2.7/lib/x64-ucrt -lgsl -lgslcblas -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/RtmpeQGEj8/R.INSTALLf450fa1547/rcontroll/src'
make[1]: Entering directory '/d/temp/RtmpeQGEj8/R.INSTALLf450fa1547/rcontroll/src'
make[1]: Leaving directory '/d/temp/RtmpeQGEj8/R.INSTALLf450fa1547/rcontroll/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-rcontroll/00new/rcontroll/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'rcontroll' as rcontroll_0.1.1.zip
* DONE (rcontroll)