* installing *source* package 'gremlin' ...
** package 'gremlin' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
using C++ compiler: 'g++.exe (GCC) 13.2.0'
make[1]: Entering directory '/d/temp/RtmpuQO23Z/R.INSTALL283c0621b508a/gremlin/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ai.cc -o ai.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs.c -o cs.o
cs.c: In function 'cs_realloc':
cs.c:1199:26: warning: pointer 'p' may be used after 'realloc' [-Wuse-after-free]
1199 | return ((*ok) ? pnew : p) ; /* return original p if failure */
| ~~~~~~~~~~~~~~^~~~
cs.c:1197:12: note: call to 'realloc' here
1197 | pnew = realloc (p, CS_MAX (n,1) * size) ; /* realloc the block */
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_cbind.c -o cs_cbind.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_chol2inv_ii.c -o cs_chol2inv_ii.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_cov2cor.c -o cs_cov2cor.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_directsum.c -o cs_directsum.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_directsumupdate.c -o cs_directsumupdate.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_droprowcol.cc -o cs_droprowcol.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_inv.c -o cs_inv.o
cs_inv.c: In function 'cs_inv':
cs_inv.c:52:10: warning: 'icol' may be used uninitialized [-Wmaybe-uninitialized]
52 | if (irow != icol) {
| ^
cs_inv.c:7:15: note: 'icol' was declared here
7 | int n, i, icol,irow,j,k,l,ll;
| ^~~~
cs_inv.c:52:10: warning: 'irow' may be used uninitialized [-Wmaybe-uninitialized]
52 | if (irow != icol) {
| ^
cs_inv.c:7:20: note: 'irow' was declared here
7 | int n, i, icol,irow,j,k,l,ll;
| ^~~~
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_kroneckerA.c -o cs_kroneckerA.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_kroneckerAupdate.c -o cs_kroneckerAupdate.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_kroneckerI.c -o cs_kroneckerI.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_kroneckerIupdate.c -o cs_kroneckerIupdate.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_omega.c -o cs_omega.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_omegaupdate.c -o cs_omegaupdate.o
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cs_schur.c -o cs_schur.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gradFun.cc -o gradFun.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c gremlin.cc -o gremlin.o
In function 'double simple_toc(const double*)',
inlined from 'void ugremlin(double*, int*, int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, int*, int*, int*, int*, int*, int*, int*, double*, int*, double*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, double*, double*, double*, double*, int*, int*, int*)' at gremlin.cc:346:20:
gremlin.cc:39:22: warning: 't[0]' may be used uninitialized [-Wmaybe-uninitialized]
39 | return ((toc [0] - tic [0]) + 1e-9 * (toc [1] - tic [1])) ;
| ~~~~~~~~~^~~~~~~~~~
gremlin.cc: In function 'void ugremlin(double*, int*, int*, int*, int*, int*, int*, int*, int*, double*, int*, int*, double*, double*, int*, int*, int*, int*, int*, int*, int*, double*, int*, double*, int*, int*, int*, double*, double*, double*, double*, double*, double*, double*, int*, int*, double*, double*, double*, double*, int*, int*, int*)':
gremlin.cc:112:10: note: 't[0]' was declared here
112 | double t[2], T[2], took, dsLc, tyRinvy, tyPy, logDetC, sigma2e = 1.0,
| ^
gremlin.cc:516:28: warning: 'KRinv' may be used uninitialized [-Wmaybe-uninitialized]
516 | cs_kroneckerIupdate(Rinv, dimZWG[2], KRinv);
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
gremlin.cc:97:22: note: 'KRinv' was declared here
97 | *R, *Rinv, *KRinv, *tyRinv, *tWKRinv, *tWKRinvW, *ttWKRinvW,
| ^~~~~
gremlin.cc:520:17: warning: 'tyRinv' may be used uninitialized [-Wmaybe-uninitialized]
520 | cs_gaxpy(KRinv, y, tyRinv->x); // y = A*x+y XXX my `y` is cs_gaxpy's `x`
| ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
gremlin.cc:97:30: note: 'tyRinv' was declared here
97 | *R, *Rinv, *KRinv, *tyRinv, *tWKRinv, *tWKRinvW, *ttWKRinvW,
| ^~~~~~
gremlin.cc:560:19: warning: 'Ctmp' may be used uninitialized [-Wmaybe-uninitialized]
560 | C = cs_add(tWKRinvW, Ctmp, 1.0, 1.0);
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
gremlin.cc:98:11: note: 'Ctmp' was declared here
98 | *Ctmp, *C,
| ^~~~
gremlin.cc:510:18: warning: 'tWKRinv' may be used uninitialized [-Wmaybe-uninitialized]
510 | cs_spfree(tWKRinv);
| ~~~~~~~~~^~~~~~~~~
gremlin.cc:97:39: note: 'tWKRinv' was declared here
97 | *R, *Rinv, *KRinv, *tyRinv, *tWKRinv, *tWKRinvW, *ttWKRinvW,
| ^~~~~~~
gremlin.cc:1168:22: warning: 'Lc' may be used uninitialized [-Wmaybe-uninitialized]
1168 | cs_chol2inv_ii(Lc->L, sLc->pinv, Cinv_ii, 0);
| ~~~~^
gremlin.cc:103:11: note: 'Lc' was declared here
103 | csn *Lc;
| ^~
gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c qNewtRhap.cc -o qNewtRhap.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tugug_trace.cc -o tugug_trace.o
g++ -std=gnu++17 -shared -s -static-libgcc -o gremlin.dll tmp.def ai.o cs.o cs_cbind.o cs_chol2inv_ii.o cs_cov2cor.o cs_directsum.o cs_directsumupdate.o cs_droprowcol.o cs_inv.o cs_kroneckerA.o cs_kroneckerAupdate.o cs_kroneckerI.o cs_kroneckerIupdate.o cs_omega.o cs_omegaupdate.o cs_schur.o gradFun.o gremlin.o init.o qNewtRhap.o tugug_trace.o -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/RtmpuQO23Z/R.INSTALL283c0621b508a/gremlin/src'
make[1]: Entering directory '/d/temp/RtmpuQO23Z/R.INSTALL283c0621b508a/gremlin/src'
make[1]: Leaving directory '/d/temp/RtmpuQO23Z/R.INSTALL283c0621b508a/gremlin/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-gremlin/00new/gremlin/libs/x64
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'gremlin' as gremlin_1.0.1.zip
* DONE (gremlin)