* installing *source* package 'NetworkInference' ...
** package 'NetworkInference' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.2.0'
using C++ compiler: 'g++.exe (GCC) 13.2.0'
using C++11
make[1]: Entering directory '/d/temp/RtmpOUvOXj/R.INSTALL304d0e04725d/NetworkInference/src'
gcc  -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -Wstrict-prototypes -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c NetworkInference_init.c -o NetworkInference_init.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c distributions.cpp -o distributions.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c netinf.cpp -o netinf.o
netinf.cpp: In function 'Rcpp::List tree_replacement(int&, int&, edge_map&, Rcpp::List&, Rcpp::List&, Rcpp::List&, std::string&, Rcpp::NumericVector&)':
netinf.cpp:199:22: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
  199 |     for(int c = 0; c < cascades.size(); c++) {
      |                    ~~^~~~~~~~~~~~~~~~~
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c netinf_utilities.cpp -o netinf_utilities.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c possible_edges.cpp -o possible_edges.o
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c spanning_tree.cpp -o spanning_tree.o
spanning_tree.cpp: In function 'double edge_score(double&, double&, std::string&, Rcpp::NumericVector&, bool)':
spanning_tree.cpp:21:18: warning: 'y' may be used uninitialized [-Wmaybe-uninitialized]
   21 |         out = log(0.0000000001 * y);
      |               ~~~^~~~~~~~~~~~~~~~~~
spanning_tree.cpp:9:12: note: 'y' was declared here
    9 |     double y;
      |            ^
g++  -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c vuong_test.cpp -o vuong_test.o
g++ -shared -s -static-libgcc -o NetworkInference.dll tmp.def NetworkInference_init.o RcppExports.o distributions.o netinf.o netinf_utilities.o possible_edges.o spanning_tree.o vuong_test.o -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR
make[1]: Leaving directory '/d/temp/RtmpOUvOXj/R.INSTALL304d0e04725d/NetworkInference/src'
make[1]: Entering directory '/d/temp/RtmpOUvOXj/R.INSTALL304d0e04725d/NetworkInference/src'
make[1]: Leaving directory '/d/temp/RtmpOUvOXj/R.INSTALL304d0e04725d/NetworkInference/src'
installing to d:/Rcompile/CRANpkg/lib/4.5/00LOCK-NetworkInference/00new/NetworkInference/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'NetworkInference' as NetworkInference_1.2.4.zip
* DONE (NetworkInference)