• using R Under development (unstable) (2012-02-27 r58511)
• using platform: x86_64-pc-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'wq/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'wq' version '0.3-5'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'wq' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• loading checks for arch 'x64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  decompTs: warning in ts(annualmeanReps, s = startyr, f = 12): partial
  argument match of 's' to 'start'
  decompTs: warning in ts(annualmeanReps, s = startyr, f = 12): partial
  argument match of 'f' to 'frequency'
  decompTs: warning in ts(rep(monthmean, endyr - startyr + 1), s =
  startyr, f = 12): partial argument match of 's' to 'start'
  decompTs: warning in ts(rep(monthmean, endyr - startyr + 1), s =
  startyr, f = 12): partial argument match of 'f' to 'frequency'
  decompTs: warning in ts(as.vector(resids), s = startyr, f = 12):
  partial argument match of 's' to 'start'
  decompTs: warning in ts(as.vector(resids), s = startyr, f = 12):
  partial argument match of 'f' to 'frequency'
  eofNum: no visible binding for global variable 'cumVarLine'
  eofPlot: no visible binding for global variable 'value'
  eofPlot: no visible binding for global variable 'id'
  interpTs : replaceNA: warning in ts(x, st = tspx[1], fr = tspx[3]):
  partial argument match of 'st' to 'start'
  interpTs : replaceNA: warning in ts(x, st = tspx[1], fr = tspx[3]):
  partial argument match of 'fr' to 'frequency'
  mannKen: no visible binding for global variable 'variable'
  mannKen: no visible binding for global variable 'sen.slope'
  mannKen: no visible binding for global variable 'sen.slope.pct'
  mannKen: no visible binding for global variable 'tau'
  mannKen: no visible binding for global variable 'p.value'
  mannKen: no visible binding for global variable 'miss'
  monthNum: warning in months(y, abbrev = TRUE): partial argument match
  of 'abbrev' to 'abbreviate'
  plotSeason: no visible binding for global variable 'yr'
  plotSeason: no visible binding for global variable 'mon'
  plotSeason: no visible binding for global variable 'int'
  plotSeason: no visible binding for global variable 'value'
  plotSeason: no visible binding for global variable 'too.few'
  plotSeason: warning in ts(x1, st = start(x)): partial argument match of
  'st' to 'start'
  plotTs: no visible binding for global variable 'variable'
  plotTs: no visible binding for global variable 'value'
  plotTsAnom: no visible binding for global variable 'variable'
  plotTsAnom: no visible binding for global variable 'value'
  plotTsTile: no visible binding for global variable 'yr'
  plotTsTile: no visible binding for global variable 'mon'
  plotTsTile: no visible binding for global variable 'value'
  seaRoll: no visible binding for global variable 'sen.slope'
  seaRoll: no visible binding for global variable 'p.value'
  seasonTrend: warning in ts(xj[cycle(x1) == i], s = first, end = last):
  partial argument match of 's' to 'start'
  seasonTrend: no visible binding for global variable 'season'
  seasonTrend: no visible binding for global variable 'p'
  tsSub: warning in ts(x3, start = stx[1], freq = length(seas)): partial
  argument match of 'freq' to 'frequency'
  wqData: no visible binding for global variable 'x'
  wqData: no visible binding for global variable 'value'
  wqData: no visible binding for global variable 'site'
  wqData: no visible binding for global variable 'variable'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under 'inst/doc' ... OK
• checking installed files from 'inst/doc' ... NOTE
  The following files should probably not be installed:
  'limnology_and_oceanography.bst'
  
  Consider the use of a .Rinstignore file: see 'Writing R Extensions',
  or move the vignette sources from 'inst/doc' to 'vignettes'.
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x64' ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  'd:/Rcompile/CRANpkg/local/2.15/wq.Rcheck/00check.log'
  for details.