Check results for 'sca'

using R Under development (unstable) (2012-02-24 r58481)
using platform: x86_64-pc-mingw32 (64-bit)
using session charset: ISO8859-1
checking for file 'sca/DESCRIPTION' ... OK
this is package 'sca' version '0.8-7'
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
checking whether package 'sca' can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
File 'sca/R/aaa.R':
.First.lib calls:
require(stats)

Package startup functions should not change the search path.
See section 'Good practice' in ?.onAttach.
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... WARNING
'library' or 'require' call not declared from: 'MASS'
checking contents of 'data' directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
checking for unstated dependencies in tests ... WARNING
'library' or 'require' call not declared from: 'MASS'
checking tests ...
** running tests for arch 'i386' OK
Running '3ex.R'
Comparing '3ex.Rout' to '3ex.Rout.save' ... OK
Running 'artif3.R'
Comparing 'artif3.Rout' to 'artif3.Rout.save' ... OK
** running tests for arch 'x64' OK
Running '3ex.R'
Comparing '3ex.Rout' to '3ex.Rout.save' ... OK
Running 'artif3.R'
Comparing 'artif3.Rout' to 'artif3.Rout.save' ...137,140c137,140
< [6,] 1 + + ,
< [7,] + 1 + ,
< [8,] + + 1 ,
< [9,] , , , 1
---
> [6,] 1 , + ,
> [7,] , 1 + +
> [8,] + + 1 +
> [9,] , + + 1
157,159c157,159
< V1 0 1 0 1 0
< V2 0 1 0 1 0
< V3 0 1 0 -2 0
---
> V1 0 1 0 0 1
> V2 0 1 0 0 0
> V3 0 1 0 0 -1
162,163c162,163
< V6 1 0 0 0 0
< V7 1 0 0 0 1
---
> V6 1 0 0 1 0
> V7 1 0 0 0 0
165c165
< V9 1 0 0 0 -1
---
> V9 1 0 0 -1 0
168c168
< 38.68 % 28.60 % 20.12 % 3.30 % 2.45 %
---
> 38.67 % 28.59 % 20.13 % 3.26 % 2.60 %
170c170
< 37.93 % 28.14 % 20.69 % 2.72 % 2.77 %
---
> 37.91 % 28.15 % 20.69 % 2.90 % 2.62 %
172,174c172,174
< Extracted variability PCA: 93.16 %
< Extracted variability SCA: 91.40 %
< Optimality SCA : 98.11 %
---
> Extracted variability PCA: 93.24 %
> Extracted variability SCA: 91.56 %
> Optimality SCA : 98.20 %
178,182c178,182
< B1 1.00 0.05 0.08 0.08 0.02
< B2 0.05 1.00 0.10 0.01 -0.02
< B3 0.08 0.10 1.00 0.13 -0.29
< D4 0.08 0.01 0.13 1.00 -0.26
< D5 0.02 -0.02 -0.29 -0.26 1.00
---
> B1 1.00 0.05 0.08 0.00 0.09
> B2 0.05 1.00 0.10 -0.06 0.00
> B3 0.08 0.10 1.00 -0.27 -0.11
> D4 0.00 -0.06 -0.27 1.00 0.14
> D5 0.09 0.00 -0.11 0.14 1.00
184c184
< Max (abs) correlation: 0.29 ( B3 - D5 )
---
> Max (abs) correlation: 0.27 ( B3 - D4 )
197,198c197,198
< Number of block-components : 2
< Number of diff.-components : 3
---
> Number of block-components : 3
> Number of diff.-components : 2
201,208c201,208
< B1 B2 D3 D4 D5
< V1 0 1 2 1 0
< V2 0 1 2 1 0
< V3 0 1 2 -2 0
< V4 0 1 -3 0 0
< V5 0 1 -3 0 0
< V6 1 0 0 0 0
< V7 1 0 0 0 1
---
> B1 B2 B3 D4 D5
> V1 0 1 0 0 1
> V2 0 1 0 0 0
> V3 0 1 0 0 -1
> V4 0 0 1 0 0
> V5 0 0 1 0 0
> V6 1 0 0 1 0
> V7 1 0 0 0 0
210c210
< V9 1 0 0 0 -1
---
> V9 1 0 0 -1 0
213c213
< 38.68 % 28.60 % 20.12 % 3.30 % 2.45 %
---
> 38.67 % 28.59 % 20.13 % 3.26 % 2.60 %
215c215
< 37.93 % 27.52 % 21.30 % 2.72 % 2.77 %
---
> 37.91 % 28.15 % 20.69 % 2.90 % 2.62 %
217,219c217,219
< Extracted variability PCA: 93.16 %
< Extracted variability SCA: 91.21 %
< Optimality SCA : 97.91 %
---
> Extracted variability PCA: 93.24 %
> Extracted variability SCA: 91.56 %
> Optimality SCA : 98.20 %
222,227c222,227
< B1 B2 D3 D4 D5
< B1 1.00 0.08 -0.03 0.08 0.02
< B2 0.08 1.00 0.13 0.08 -0.18
< D3 -0.03 0.13 1.00 -0.09 0.21
< D4 0.08 0.08 -0.09 1.00 -0.26
< D5 0.02 -0.18 0.21 -0.26 1.00
---
> B1 B2 B3 D4 D5
> B1 1.00 0.05 0.08 0.00 0.09
> B2 0.05 1.00 0.10 -0.06 0.00
> B3 0.08 0.10 1.00 -0.27 -0.11
> D4 0.00 -0.06 -0.27 1.00 0.14
> D5 0.09 0.00 -0.11 0.14 1.00
229c229
< Max (abs) correlation: 0.26 ( D4 - D5 )
---
> Max (abs) correlation: 0.27 ( B3 - D4 )
236c236
< .. ..$ : chr [1:5] "B1" "B2" "D3" "D4" ...
---
> .. ..$ : chr [1:5] "B1" "B2" "B3" "D4" ...
240c240
< .. ..$ : chr [1:5] "B1" "B2" "D3" "D4" ...
---
> .. ..$ : chr [1:5] "B1" "B2" "B3" "D4" ...
242,244c242,244
< ..$ varpc : num [1:5] 0.3868 0.286 0.2012 0.033 0.0245
< ..$ varsc : Named num [1:5] 0.3793 0.2752 0.213 0.0272 0.0277
< .. ..- attr(*, "names")= chr [1:5] "B1" "B2" "D3" "D4" ...
---
> ..$ varpc : num [1:5] 0.3867 0.2859 0.2013 0.0326 0.026
> ..$ varsc : Named num [1:5] 0.3791 0.2815 0.2069 0.029 0.0262
> .. ..- attr(*, "names")= chr [1:5] "B1" "B2" "B3" "D4" ...
246,248c246,248
< ..$ cumsc : num 0.912
< ..$ opt : num 0.979
< ..$ corsc : num [1:5, 1:5] 1 0.0803 -0.0293 0.0762 0.0197 ...
---
> ..$ cumsc : num 0.916
> ..$ opt : num 0.982
> ..$ corsc : num [1:5, 1:5] 1 0.04578 0.08229 0.00156 0.09325 ...
250,251c250,251
< .. .. ..$ : chr [1:5] "B1" "B2" "D3" "D4" ...
< .. .. ..$ : chr [1:5] "B1" "B2" "D3" "D4" ...
---
> .. .. ..$ : chr [1:5] "B1" "B2" "B3" "D4" ...
> .. .. ..$ : chr [1:5] "B1" "B2" "B3" "D4" ...
253,257c253,257
< .. ..$ row: chr "D4"
< .. ..$ col: chr "D5"
< .. ..$ val: num 0.262
< $ nblock : num 2
< $ ndiff : num 3
---
> .. ..$ row: chr "B3"
> .. ..$ col: chr "D4"
> .. ..$ val: num 0.275
> $ nblock : num 3
> $ ndiff : num 2
262c262
< $ vardata : num [1:9, 1:9] 1 0.777 0.769 0.14 0.108 ...
---
> $ vardata : num [1:9, 1:9] 1 0.7694 0.7638 0.0761 0.0515 ...
291,296c291,296
< [13,] 1 + * + * +
< [14,] + 1 + + + *
< [15,] * + 1 + + *
< [16,] + + + 1 + *
< [17,] * + + + 1 *
< [18,] + * * * * 1
---
> [13,] 1 * + * + *
> [14,] * 1 + + * *
> [15,] + + 1 + + +
> [16,] * + + 1 + *
> [17,] + * + + 1 +
> [18,] * * + * + 1
299,308c299,308
< [21,] 1 , , + + , + + + +
< [22,] , 1 , + + , , + + +
< [23,] , , 1 , , , + + , ,
< [24,] + + , 1 + + + + + +
< [25,] + + , + 1 + + + + +
< [26,] , , , + + 1 + + + +
< [27,] + , + + + + 1 + + +
< [28,] + + + + + + + 1 + +
< [29,] + + , + + + + + 1 +
< [30,] + + , + + + + + + 1
---
> [21,] 1 + + + + + + + + +
> [22,] + 1 + + + + , , + +
> [23,] + + 1 , + + + , + +
> [24,] + + , 1 , + , , + ,
> [25,] + + + , 1 + , , + +
> [26,] + + + + + 1 + , + +
> [27,] + , + , , + 1 , + +
> [28,] + , , , , , , 1 , +
> [29,] + + + + + + + , 1 +
> [30,] + + + , + + + + + 1
325,330c325,330
< V1 1 0 0 0 5
< V2 1 0 0 0 5
< V3 1 0 0 0 -4
< V4 1 0 0 0 0
< V5 1 0 0 0 -4
< V6 1 0 0 0 -4
---
> V1 1 0 0 0 0
> V2 1 0 0 0 0
> V3 1 0 0 0 2
> V4 1 0 0 0 2
> V5 1 0 0 0 2
> V6 1 0 0 0 -3
332c332
< V8 1 0 0 0 5
---
> V8 1 0 0 0 0
334,336c334,336
< V10 1 0 0 0 -4
< V11 1 0 0 0 5
< V12 1 0 0 0 -4
---
> V10 1 0 0 0 0
> V11 1 0 0 0 0
> V12 1 0 0 0 -3
357c357
< 30.05 % 27.58 % 18.22 % 6.38 % 1.19 %
---
> 30.04 % 27.58 % 18.22 % 6.38 % 1.19 %
361,362c361,362
< Extracted variability PCA: 83.42 %
< Extracted variability SCA: 83.21 %
---
> Extracted variability PCA: 83.41 %
> Extracted variability SCA: 83.19 %
367,371c367,371
< B1 1.00 -0.01 -0.04 0.00 -0.01
< B2 -0.01 1.00 -0.01 -0.01 -0.01
< B3 -0.04 -0.01 1.00 -0.01 0.00
< B4 0.00 -0.01 -0.01 1.00 0.02
< D5 -0.01 -0.01 0.00 0.02 1.00
---
> B1 1.00 -0.01 -0.04 0.00 0.01
> B2 -0.01 1.00 -0.01 -0.01 0.04
> B3 -0.04 -0.01 1.00 -0.01 0.02
> B4 0.00 -0.01 -0.01 1.00 -0.05
> D5 0.01 0.04 0.02 -0.05 1.00
373c373
< Max (abs) correlation: 0.04 ( B1 - B3 )
---
> Max (abs) correlation: 0.05 ( B4 - D5 )
391,396c391,396
< V1 1 0 0 0 5
< V2 1 0 0 0 5
< V3 1 0 0 0 -4
< V4 1 0 0 0 0
< V5 1 0 0 0 -4
< V6 1 0 0 0 -4
---
> V1 1 0 0 0 0
> V2 1 0 0 0 0
> V3 1 0 0 0 2
> V4 1 0 0 0 2
> V5 1 0 0 0 2
> V6 1 0 0 0 -3
398c398
< V8 1 0 0 0 5
---
> V8 1 0 0 0 0
400,402c400,402
< V10 1 0 0 0 -4
< V11 1 0 0 0 5
< V12 1 0 0 0 -4
---
> V10 1 0 0 0 0
> V11 1 0 0 0 0
> V12 1 0 0 0 -3
423c423
< 30.05 % 27.58 % 18.22 % 6.38 % 1.19 %
---
> 30.04 % 27.58 % 18.22 % 6.38 % 1.19 %
427,428c427,428
< Extracted variability PCA: 83.42 %
< Extracted variability SCA: 83.21 %
---
> Extracted variability PCA: 83.41 %
> Extracted variability SCA: 83.19 %
433,437c433,437
< B1 1.00 -0.01 -0.04 0.00 -0.01
< B2 -0.01 1.00 -0.01 -0.01 -0.01
< B3 -0.04 -0.01 1.00 -0.01 0.00
< B4 0.00 -0.01 -0.01 1.00 0.02
< D5 -0.01 -0.01 0.00 0.02 1.00
---
> B1 1.00 -0.01 -0.04 0.00 0.01
> B2 -0.01 1.00 -0.01 -0.01 0.04
> B3 -0.04 -0.01 1.00 -0.01 0.02
> B4 0.00 -0.01 -0.01 1.00 -0.05
> D5 0.01 0.04 0.02 -0.05 1.00
439c439
< Max (abs) correlation: 0.04 ( B1 - B3 )
---
> Max (abs) correlation: 0.05 ( B4 - D5 )
452c452
< ..$ varpc : num [1:5] 0.3005 0.2758 0.1822 0.0638 0.0119
---
> ..$ varpc : num [1:5] 0.3004 0.2758 0.1822 0.0638 0.0119
458c458
< ..$ corsc : num [1:5, 1:5] 1 -0.01251 -0.04427 -0.00435 -0.0091 ...
---
> ..$ corsc : num [1:5, 1:5] 1 -0.01233 -0.04419 -0.00432 0.01471 ...
463,465c463,465
< .. ..$ row: chr "B1"
< .. ..$ col: chr "B3"
< .. ..$ val: num 0.0443
---
> .. ..$ row: chr "B4"
> .. ..$ col: chr "D5"
> .. ..$ val: num 0.0515
472c472
< $ vardata : num [1:30, 1:30] 1 0.709 0.694 0.712 0.716 ...
---
> $ vardata : num [1:30, 1:30] 1 0.729 0.714 0.707 0.713 ...
checking PDF version of manual ... OK
WARNING: There were 2 warnings.
NOTE: There were 2 notes.
See
'd:/Rcompile/CRANpkg/local/2.15/sca.Rcheck/00check.log'
for details.