• using R Under development (unstable) (2012-02-27 r58511)
• using platform: x86_64-pc-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'proxy/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'proxy' version '0.4-7'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'proxy' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• loading checks for arch 'x64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... NOTE
  File 'd:/Rcompile/CRANpkg/lib/2.15/proxy/libs/i386/proxy.dll':
  Found 'abort', possibly from 'abort' (C)
  File 'd:/Rcompile/CRANpkg/lib/2.15/proxy/libs/x64/proxy.dll':
  Found 'abort', possibly from 'abort' (C)
  
  Compiled code should not call functions which might terminate R nor
  write to stdout/stderr instead of to the console. The detected symbols
  are linked into the code but might come from libraries and not actually
  be called.
  
  See 'Writing portable packages' in the 'Writing R Extensions' manual.
• checking sizes of PDF files under 'inst/doc' ... OK
• checking installed files from 'inst/doc' ... OK
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x64' ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ...
  ** running tests for arch 'i386' OK
  Running 'apply.R'
  Comparing 'apply.Rout' to 'apply.Rout.save' ...10d9
  < The following object(s) are masked from 'package:stats':
  12c11,14
  < as.dist, dist
  ---
  > The following object(s) are masked from package:stats :
  >
  > as.dist,
  > dist
  24,28c26,30
  < [1,] 0.4595829 0.246283120 0.6662151 0.2658000
  < [2,] 0.8390691 0.002929016 0.3449861 0.4751930
  < [3,] 0.0377036 0.300615279 0.1399626 0.5143060
  < [4,] 0.7621676 0.963274350 0.4358104 0.7934745
  < [5,] 0.1211588 0.452265898 0.8005272 0.3062947
  ---
  > [1,] 0.45958286 0.246283120 0.6662151 0.2658000
  > [2,] 0.83906910 0.002929016 0.3449861 0.4751930
  > [3,] 0.03770360 0.300615279 0.1399626 0.5143060
  > [4,] 0.76216756 0.963274350 0.4358104 0.7934745
  > [5,] 0.12115883 0.452265898 0.8005272 0.3062947
  104c106
  < [1] 0.0377036 0.3006153 0.1399626 0.5143060
  ---
  > [1] 0.03770360 0.30061528 0.13996262 0.51430601
  252a255,257
  > Warning message:
  > longer object length
  > is not a multiple of shorter object length in: nax != nay
  Running 'distance.R'
  Comparing 'distance.Rout' to 'distance.Rout.save' ...12d11
  < The following object(s) are masked from 'package:stats':
  14c13,16
  < as.dist, dist
  ---
  > The following object(s) are masked from package:stats :
  >
  > as.dist,
  > dist
  30,34c32,36
  < A 0.0000000 0.000000000 0.0000000 0.0000000
  < B 0.8390691 0.002929016 0.3449861 0.4751930
  < C 0.0377036 0.300615279 0.1399626 0.5143060
  < D 0.7621676 0.963274350 0.4358104 0.7934745
  < E 0.1211588 0.452265898 0.8005272 0.3062947
  ---
  > A 0.00000000 0.000000000 0.0000000 0.0000000
  > B 0.83906910 0.002929016 0.3449861 0.4751930
  > C 0.03770360 0.300615279 0.1399626 0.5143060
  > D 0.76216756 0.963274350 0.4358104 0.7934745
  > E 0.12115883 0.452265898 0.8005272 0.3062947
  37,41c39,43
  < A 0.4595829 0.2462831 0.6662151 0.2658000
  < B 0.0000000 0.0000000 0.0000000 0.0000000
  < C 0.0377036 0.3006153 0.1399626 0.5143060
  < D 0.7621676 0.9632744 0.4358104 0.7934745
  < E 0.1211588 0.4522659 0.8005272 0.3062947
  ---
  > A 0.45958286 0.2462831 0.6662151 0.2658000
  > B 0.00000000 0.0000000 0.0000000 0.0000000
  > C 0.03770360 0.3006153 0.1399626 0.5143060
  > D 0.76216756 0.9632744 0.4358104 0.7934745
  > E 0.12115883 0.4522659 0.8005272 0.3062947
  Running 'distcalls.R'
  Comparing 'distcalls.Rout' to 'distcalls.Rout.save' ...11d10
  < The following object(s) are masked from 'package:stats':
  13c12,15
  < as.dist, dist
  ---
  > The following object(s) are masked from package:stats :
  >
  > as.dist,
  > dist
  40d41
  < Fager: OK.
  42c43
  < simple matching: OK.
  ---
  > Simple Matching: OK.
  44d44
  < Faith: OK.
  53c53
  < Simpson: OK.
  ---
  > Simson: OK.
  59,60c59,60
  < Chi-squared: OK.
  < Phi-squared: OK.
  ---
  > Chi-Squared: OK.
  > PhiSquared: OK.
  71c71
  < divergence: OK.
  ---
  > Divergence: OK.
  75,79d74
  < Podani: OK.
  < Chord: OK.
  < Geodesic: OK.
  < Whittaker: OK.
  < Hellinger: OK.
  103c98
  < There were 29 warnings (use warnings() to see them)
  ---
  > There were 22 warnings (use warnings() to see them)
  105c100
  < There were 50 or more warnings (use warnings() to see the first 50)
  ---
  > There were 44 warnings (use warnings() to see them)
  115d109
  < Fager: OK.
  117c111
  < simple matching: OK.
  ---
  > Simple Matching: OK.
  119d112
  < Faith: OK.
  128c121
  < Simpson: OK.
  ---
  > Simson: OK.
  134,135c127,128
  < Chi-squared: OK.
  < Phi-squared: OK.
  ---
  > Chi-Squared: OK.
  > PhiSquared: OK.
  146c139
  < divergence: OK.
  ---
  > Divergence: OK.
  150,154d142
  < Podani: OK.
  < Chord: OK.
  < Geodesic: OK.
  < Whittaker: OK.
  < Hellinger: OK.
  166a155,167
  >
  > Attaching package: 'cba'
  >
  >
  > The following object(s) are masked from package:proxy :
  >
  > col.dist,
  > colMeans.dist,
  > colSums.dist,
  > row.dist,
  > rowMeans.dist,
  > rowSums.dist
  >
  Running 'registry.R'
  Comparing 'registry.Rout' to 'registry.Rout.save' ...10d9
  < The following object(s) are masked from 'package:stats':
  12c11,14
  < as.dist, dist
  ---
  > The following object(s) are masked from package:stats :
  >
  > as.dist,
  > dist
  29d30
  < type character
  30a32
  > type character
  36d37
  < type logical
  37a39
  > type logical
  43d44
  < type character
  44a46
  > type character
  50d51
  < type NA
  51a53
  > type NA
  83d84
  < type NA
  84a86
  > type NA
  100d101
  < type NA
  101a103
  > type NA
  Running 'util.R'
  Comparing 'util.Rout' to 'util.Rout.save' ...10d9
  < The following object(s) are masked from 'package:stats':
  12c11,14
  < as.dist, dist
  ---
  > The following object(s) are masked from package:stats :
  >
  > as.dist,
  > dist
  20,23c22,25
  < 2 0.8390691
  < 3 0.0377036 0.3006153
  < 4 0.7621676 0.9632744 0.4358104
  < 5 0.1211588 0.4522659 0.8005272 0.3062947
  ---
  > 2 0.83906910
  > 3 0.03770360 0.30061528
  > 4 0.76216756 0.96327435 0.43581036
  > 5 0.12115883 0.45226590 0.80052719 0.30629473
  58,59c60,61
  < 2 0.0377036
  < 3 0.1211588 0.8005272
  ---
  > 2 0.03770360
  > 3 0.12115883 0.80052719
  66,67c68,69
  < C 0.0377036
  < E 0.1211588 0.8005272
  ---
  > C 0.03770360
  > E 0.12115883 0.80052719
  119,120c121,122
  < C 0.0377036
  < E 0.1211588 0.8005272
  ---
  > C 0.03770360
  > E 0.12115883 0.80052719
  123,124c125,126
  < C 0.0377036
  < E 0.1211588 0.8005272
  ---
  > C 0.03770360
  > E 0.12115883 0.80052719
  ** running tests for arch 'x64' OK
  Running 'apply.R'
  Comparing 'apply.Rout' to 'apply.Rout.save' ...10d9
  < The following object(s) are masked from 'package:stats':
  12c11,14
  < as.dist, dist
  ---
  > The following object(s) are masked from package:stats :
  >
  > as.dist,
  > dist
  24,28c26,30
  < [1,] 0.4595829 0.246283120 0.6662151 0.2658000
  < [2,] 0.8390691 0.002929016 0.3449861 0.4751930
  < [3,] 0.0377036 0.300615279 0.1399626 0.5143060
  < [4,] 0.7621676 0.963274350 0.4358104 0.7934745
  < [5,] 0.1211588 0.452265898 0.8005272 0.3062947
  ---
  > [1,] 0.45958286 0.246283120 0.6662151 0.2658000
  > [2,] 0.83906910 0.002929016 0.3449861 0.4751930
  > [3,] 0.03770360 0.300615279 0.1399626 0.5143060
  > [4,] 0.76216756 0.963274350 0.4358104 0.7934745
  > [5,] 0.12115883 0.452265898 0.8005272 0.3062947
  104c106
  < [1] 0.0377036 0.3006153 0.1399626 0.5143060
  ---
  > [1] 0.03770360 0.30061528 0.13996262 0.51430601
  252a255,257
  > Warning message:
  > longer object length
  > is not a multiple of shorter object length in: nax != nay
  Running 'distance.R'
  Comparing 'distance.Rout' to 'distance.Rout.save' ...12d11
  < The following object(s) are masked from 'package:stats':
  14c13,16
  < as.dist, dist
  ---
  > The following object(s) are masked from package:stats :
  >
  > as.dist,
  > dist
  30,34c32,36
  < A 0.0000000 0.000000000 0.0000000 0.0000000
  < B 0.8390691 0.002929016 0.3449861 0.4751930
  < C 0.0377036 0.300615279 0.1399626 0.5143060
  < D 0.7621676 0.963274350 0.4358104 0.7934745
  < E 0.1211588 0.452265898 0.8005272 0.3062947
  ---
  > A 0.00000000 0.000000000 0.0000000 0.0000000
  > B 0.83906910 0.002929016 0.3449861 0.4751930
  > C 0.03770360 0.300615279 0.1399626 0.5143060
  > D 0.76216756 0.963274350 0.4358104 0.7934745
  > E 0.12115883 0.452265898 0.8005272 0.3062947
  37,41c39,43
  < A 0.4595829 0.2462831 0.6662151 0.2658000
  < B 0.0000000 0.0000000 0.0000000 0.0000000
  < C 0.0377036 0.3006153 0.1399626 0.5143060
  < D 0.7621676 0.9632744 0.4358104 0.7934745
  < E 0.1211588 0.4522659 0.8005272 0.3062947
  ---
  > A 0.45958286 0.2462831 0.6662151 0.2658000
  > B 0.00000000 0.0000000 0.0000000 0.0000000
  > C 0.03770360 0.3006153 0.1399626 0.5143060
  > D 0.76216756 0.9632744 0.4358104 0.7934745
  > E 0.12115883 0.4522659 0.8005272 0.3062947
  Running 'distcalls.R'
  Comparing 'distcalls.Rout' to 'distcalls.Rout.save' ...11d10
  < The following object(s) are masked from 'package:stats':
  13c12,15
  < as.dist, dist
  ---
  > The following object(s) are masked from package:stats :
  >
  > as.dist,
  > dist
  40d41
  < Fager: OK.
  42c43
  < simple matching: OK.
  ---
  > Simple Matching: OK.
  44d44
  < Faith: OK.
  53c53
  < Simpson: OK.
  ---
  > Simson: OK.
  59,60c59,60
  < Chi-squared: OK.
  < Phi-squared: OK.
  ---
  > Chi-Squared: OK.
  > PhiSquared: OK.
  71c71
  < divergence: OK.
  ---
  > Divergence: OK.
  75,79d74
  < Podani: OK.
  < Chord: OK.
  < Geodesic: OK.
  < Whittaker: OK.
  < Hellinger: OK.
  103c98
  < There were 25 warnings (use warnings() to see them)
  ---
  > There were 22 warnings (use warnings() to see them)
  105c100
  < There were 50 or more warnings (use warnings() to see the first 50)
  ---
  > There were 44 warnings (use warnings() to see them)
  115d109
  < Fager: OK.
  117c111
  < simple matching: OK.
  ---
  > Simple Matching: OK.
  119d112
  < Faith: OK.
  128c121
  < Simpson: OK.
  ---
  > Simson: OK.
  134,135c127,128
  < Chi-squared: OK.
  < Phi-squared: OK.
  ---
  > Chi-Squared: OK.
  > PhiSquared: OK.
  146c139
  < divergence: OK.
  ---
  > Divergence: OK.
  150,154d142
  < Podani: OK.
  < Chord: OK.
  < Geodesic: OK.
  < Whittaker: OK.
  < Hellinger: OK.
  166a155,167
  >
  > Attaching package: 'cba'
  >
  >
  > The following object(s) are masked from package:proxy :
  >
  > col.dist,
  > colMeans.dist,
  > colSums.dist,
  > row.dist,
  > rowMeans.dist,
  > rowSums.dist
  >
  Running 'registry.R'
  Comparing 'registry.Rout' to 'registry.Rout.save' ...10d9
  < The following object(s) are masked from 'package:stats':
  12c11,14
  < as.dist, dist
  ---
  > The following object(s) are masked from package:stats :
  >
  > as.dist,
  > dist
  29d30
  < type character
  30a32
  > type character
  36d37
  < type logical
  37a39
  > type logical
  43d44
  < type character
  44a46
  > type character
  50d51
  < type NA
  51a53
  > type NA
  83d84
  < type NA
  84a86
  > type NA
  100d101
  < type NA
  101a103
  > type NA
  Running 'util.R'
  Comparing 'util.Rout' to 'util.Rout.save' ...10d9
  < The following object(s) are masked from 'package:stats':
  12c11,14
  < as.dist, dist
  ---
  > The following object(s) are masked from package:stats :
  >
  > as.dist,
  > dist
  20,23c22,25
  < 2 0.8390691
  < 3 0.0377036 0.3006153
  < 4 0.7621676 0.9632744 0.4358104
  < 5 0.1211588 0.4522659 0.8005272 0.3062947
  ---
  > 2 0.83906910
  > 3 0.03770360 0.30061528
  > 4 0.76216756 0.96327435 0.43581036
  > 5 0.12115883 0.45226590 0.80052719 0.30629473
  58,59c60,61
  < 2 0.0377036
  < 3 0.1211588 0.8005272
  ---
  > 2 0.03770360
  > 3 0.12115883 0.80052719
  66,67c68,69
  < C 0.0377036
  < E 0.1211588 0.8005272
  ---
  > C 0.03770360
  > E 0.12115883 0.80052719
  119,120c121,122
  < C 0.0377036
  < E 0.1211588 0.8005272
  ---
  > C 0.03770360
  > E 0.12115883 0.80052719
  123,124c125,126
  < C 0.0377036
  < E 0.1211588 0.8005272
  ---
  > C 0.03770360
  > E 0.12115883 0.80052719
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  'd:/Rcompile/CRANpkg/local/2.15/proxy.Rcheck/00check.log'
  for details.