• using R Under development (unstable) (2012-02-27 r58511)
• using platform: x86_64-pc-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'ppstat/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'ppstat' version '0.7'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'ppstat' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• loading checks for arch 'x64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... WARNING
  
  Note: significantly better compression could be obtained
  by using R CMD build --resave-data
  old_size new_size compress
  archeaVirus.RData 1.3Mb 101Kb xz
  toyData.RData 18Kb 6Kb xz
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... NOTE
  File 'd:/Rcompile/CRANpkg/lib/2.15/ppstat/libs/i386/ppstat.dll':
  Found 'abort', possibly from 'abort' (C)
  File 'd:/Rcompile/CRANpkg/lib/2.15/ppstat/libs/x64/ppstat.dll':
  Found 'abort', possibly from 'abort' (C)
  
  Compiled code should not call functions which might terminate R nor
  write to stdout/stderr instead of to the console. The detected symbols
  are linked into the code but might come from libraries and not actually
  be called.
  
  See 'Writing portable packages' in the 'Writing R Extensions' manual.
• checking sizes of PDF files under 'inst/doc' ... OK
• checking installed files from 'inst/doc' ... OK
• checking examples ...
  ** running examples for arch 'i386' ... ERROR
  Running examples in 'ppstat-Ex.R' failed
  The error most likely occurred in:
  
  > ### Name: ArcheaData
  > ### Title: Archea virus genome data.
  > ### Aliases: archeaVirus
  > ### Keywords: datasets
  >
  > ### ** Examples
  >
  > data(archeaVirus)
  > ## Not run:
  > ##D ## Plot of the point process data only
  > ##D plot(archeaVirus[,-c(1,2)])
  > ## End(Not run)
  > demo(archeaVirus)
  
  
  demo(archeaVirus)
  ---- ~~~~~~~~~~~
  
  > data(archeaVirus)
  
  > ## 7 archea virus genomes. Gene start and end positions and sequence
  > ## similarity hits (on plus or minus strands, protein only or also a nucleotide
  > ## sequence match) of CRISPRs (clusters of regularly interspaced
  > ## palindromic repeats) from the archea genome.
  >
  > archeaVirusSIRV1 <- subset(archeaVirus, id == "SIRV1")
  Error in .nextMethod(x) :
  no slot of name "factorColNames" for this object of class "MarkedPointProcess"
  Calls: demo ... dim -> callNextMethod -> eval -> eval -> .nextMethod
  Execution halted
  ** running examples for arch 'x64' ... ERROR
  Running examples in 'ppstat-Ex.R' failed
  The error most likely occurred in:
  
  > ### Name: ArcheaData
  > ### Title: Archea virus genome data.
  > ### Aliases: archeaVirus
  > ### Keywords: datasets
  >
  > ### ** Examples
  >
  > data(archeaVirus)
  > ## Not run:
  > ##D ## Plot of the point process data only
  > ##D plot(archeaVirus[,-c(1,2)])
  > ## End(Not run)
  > demo(archeaVirus)
  
  
  demo(archeaVirus)
  ---- ~~~~~~~~~~~
  
  > data(archeaVirus)
  
  > ## 7 archea virus genomes. Gene start and end positions and sequence
  > ## similarity hits (on plus or minus strands, protein only or also a nucleotide
  > ## sequence match) of CRISPRs (clusters of regularly interspaced
  > ## palindromic repeats) from the archea genome.
  >
  > archeaVirusSIRV1 <- subset(archeaVirus, id == "SIRV1")
  Error in .nextMethod(x) :
  no slot of name "factorColNames" for this object of class "MarkedPointProcess"
  Calls: demo ... dim -> callNextMethod -> eval -> eval -> .nextMethod
  Execution halted