• using R Under development (unstable) (2012-02-27 r58511)
• using platform: x86_64-pc-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'phmm/DESCRIPTION' ... OK
• this is package 'phmm' version '0.7-1'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'phmm' can be installed ... WARNING
  Found the following significant warnings:
  Warning: value of 'strip.white' option should be lowercase
  See http://www.r-project.org/nosvn/R.check/r-devel-windows-ix86+x86_64/phmm-00install.html for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• loading checks for arch 'x64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... NOTE
  File 'd:/Rcompile/CRANpkg/lib/2.15/phmm/libs/i386/phmm.dll':
  Found 'abort', possibly from 'abort' (C)
  Found 'printf', possibly from 'printf' (C)
  Found 'puts', possibly from 'printf' (C), 'puts' (C)
  File 'd:/Rcompile/CRANpkg/lib/2.15/phmm/libs/x64/phmm.dll':
  Found 'abort', possibly from 'abort' (C)
  Found 'printf', possibly from 'printf' (C)
  Found 'puts', possibly from 'printf' (C), 'puts' (C)
  
  Compiled code should not call functions which might terminate R nor
  write to stdout/stderr instead of to the console. The detected symbols
  are linked into the code but might come from libraries and not actually
  be called.
  
  See 'Writing portable packages' in the 'Writing R Extensions' manual.
• checking sizes of PDF files under 'inst/doc' ... OK
• checking installed files from 'inst/doc' ... NOTE
  The following files look like leftovers/mistakes:
  'phmm_poisson_df.bbl', 'phmm_poisson_df.blg'
  Please remove them from your package.
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x64' ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... WARNING
  Unused files in 'inst/doc' which are pointless or misleading
  as they will be re-created from the vignettes:
  phmm_poisson_df.R
  
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... NOTE
  Error in re-building vignettes:
  ...
  Warning: value of 'strip.white' option should be lowercase
  Loading required package: survival
  Loading required package: splines
  Loading required package: lattice
  Loading required package: Matrix
  
  Attaching package: 'lme4'
  
  The following object(s) are masked from 'package:stats':
  
  AIC, BIC
  
  Error: running 'texi2dvi' on 'phmm_poisson_df.tex' failed
  
  BibTeX errors:
  I found no \citation commands---while reading file phmm_poisson_df.aux
  I found no \bibdata command---while reading file phmm_poisson_df.aux
  I found no \bibstyle command---while reading file phmm_poisson_df.aux
  Execution halted
  
• checking PDF version of manual ... OK
  WARNING: There were 2 warnings.
  NOTE: There were 3 notes.
  See
  'd:/Rcompile/CRANpkg/local/2.15/phmm.Rcheck/00check.log'
  for details.