• using R Under development (unstable) (2012-02-24 r58481)
• using platform: x86_64-pc-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'msm/DESCRIPTION' ... OK
• this is package 'msm' version '1.1'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'msm' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• loading checks for arch 'x64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  dpexp: warning in pexp(dt, rate[-length(rate)], log = TRUE, lower.tail
  = FALSE): partial argument match of 'log' to 'log.p'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'plot.prevalence.msm':
  'plot.prevalence.msm'
  
  S3 methods shown with full name in documentation object 'plot.survfit.msm':
  'plot.survfit.msm'
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter 'Writing R documentation files' in the 'Writing R
  Extensions' manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under 'inst/doc' ... OK
• checking installed files from 'inst/doc' ... OK
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x64' ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ...
  ** running tests for arch 'i386' OK
  Running 'analyticp.R'
  Running 'boot.R'
  Running 'deriv-debug.R'
  Running 'deriv-test.R'
  Running 'deriv.R'
  Running 'errors.R'
  Running 'fev.R'
  Running 'herrors.R'
  Running 'hsim.R'
  Running 'local.R'
  Running 'misc.R'
  Running 'miscnew.R'
  Running 'pci.R'
  Running 'pearson.R'
  Running 'sim.R'
  Running 'simple.R'
  Running 'utils.R'
  ** running tests for arch 'x64' OK
  Running 'analyticp.R'
  Running 'boot.R'
  Running 'deriv-debug.R'
  Running 'deriv-test.R'
  Running 'deriv.R'
  Running 'errors.R'
  Running 'fev.R'
  Running 'herrors.R'
  Running 'hsim.R'
  Running 'local.R'
  Running 'misc.R'
  Running 'miscnew.R'
  Running 'pci.R'
  Running 'pearson.R'
  Running 'sim.R'
  Running 'simple.R'
  Running 'utils.R'
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  'd:/Rcompile/CRANpkg/local/2.15/msm.Rcheck/00check.log'
  for details.