- using R Under development (unstable) (2012-02-27 r58511)
- using platform: x86_64-pc-mingw32 (64-bit)
- using session charset: ISO8859-1
- checking for file 'mboost/DESCRIPTION' ... OK
- this is package 'mboost' version '2.1-2'
- checking package namespace information ... OK
- checking package dependencies ... NOTE
Package suggested but not available for checking: 'multicore'
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking whether package 'mboost' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
- loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
cvrisk: no visible binding for global variable 'mclapply'
stabsel: no visible binding for global variable 'mclapply'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... NOTE
Package(s) unavailable to check Rd xrefs: 'multicore'
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable compilation flags in Makevars ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... NOTE
File 'd:/Rcompile/CRANpkg/lib/2.15/mboost/libs/i386/mboost.dll':
Found 'abort', possibly from 'abort' (C)
File 'd:/Rcompile/CRANpkg/lib/2.15/mboost/libs/x64/mboost.dll':
Found 'abort', possibly from 'abort' (C)
Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console. The detected symbols
are linked into the code but might come from libraries and not actually
be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
- checking sizes of PDF files under 'inst/doc' ... OK
- checking installed files from 'inst/doc' ... OK
- checking examples ...
** running examples for arch 'i386' ... OK
** checking differences from 'mboost-Ex_i386.Rout' to 'mboost-Ex.Rout.save' ...
254c254
< 1.82015201 -0.02260988
---
> 1.82015195 -0.02260988
260c260
< [1] 2.052033e-08
---
> [1] 7.571584e-08
263c263
< [1] 3.927625e-12
---
> [1] 2.815168e-13
411c411
< -0.1298897804 0.0003555854
---
> -0.1298897900 0.0003555856
429c429
< -0.1298897992
---
> -0.1298898010
591c591
< [1] 2.017941e-12
---
> [1] 2.006573e-11
1056c1056
< Degrees of freedom (for mstop = 24): 4.481727
---
> Degrees of freedom (for mstop = 24): 4.481737
1195a1196,1202
>
> Attaching package: 'Matrix'
>
> The following object(s) are masked from 'package:base':
>
> det
>
1447,1448c1454,1455
< [ 1] ...................................... -- risk: 10338.67
< [ 41] ...................................... -- risk: 10159.83
---
> [ 1] ...................................... -- risk: 10338.66
> [ 41] ...................................... -- risk: 10159.82
1472c1479
< [101] ...................................... -- risk: 9976.165
---
> [101] ...................................... -- risk: 9976.16
1474c1481
< Final risk: 9948.544
---
> Final risk: 9948.539
1480,1513c1487,1520
< [ 151] ...................................... -- risk: 9843.543
< [ 191] ...................................... -- risk: 9745.987
< [ 231] ...................................... -- risk: 9654.787
< [ 271] ...................................... -- risk: 9569.22
< [ 311] ...................................... -- risk: 9488.736
< [ 351] ...................................... -- risk: 9412.891
< [ 391] ...................................... -- risk: 9341.306
< [ 431] ...................................... -- risk: 9273.654
< [ 471] ...................................... -- risk: 9209.644
< [ 511] ...................................... -- risk: 9149.016
< [ 551] ...................................... -- risk: 9091.536
< [ 591] ...................................... -- risk: 9036.992
< [ 631] ...................................... -- risk: 8985.191
< [ 671] ...................................... -- risk: 8935.954
< [ 711] ...................................... -- risk: 8889.12
< [ 751] ...................................... -- risk: 8844.539
< [ 791] ...................................... -- risk: 8802.074
< [ 831] ...................................... -- risk: 8761.595
< [ 871] ...................................... -- risk: 8722.985
< [ 911] ...................................... -- risk: 8686.134
< [ 951] ...................................... -- risk: 8650.941
< [ 991] ...................................... -- risk: 8617.309
< [1'031] ...................................... -- risk: 8585.151
< [1'071] ...................................... -- risk: 8554.384
< [1'111] ...................................... -- risk: 8524.931
< [1'151] ...................................... -- risk: 8496.719
< [1'191] ...................................... -- risk: 8469.681
< [1'231] ...................................... -- risk: 8443.754
< [1'271] ...................................... -- risk: 8418.879
< [1'311] ...................................... -- risk: 8395
< [1'351] ...................................... -- risk: 8372.064
< [1'391] ...................................... -- risk: 8350.022
< [1'431] ...................................... -- risk: 8328.828
< [1'471] ...................................... -- risk: 8308.44
---
> [ 151] ...................................... -- risk: 9843.537
> [ 191] ...................................... -- risk: 9745.981
> [ 231] ...................................... -- risk: 9654.78
> [ 271] ...................................... -- risk: 9569.212
> [ 311] ...................................... -- risk: 9488.728
> [ 351] ...................................... -- risk: 9412.882
> [ 391] ...................................... -- risk: 9341.297
> [ 431] ...................................... -- risk: 9273.645
> [ 471] ...................................... -- risk: 9209.634
> [ 511] ...................................... -- risk: 9149.006
> [ 551] ...................................... -- risk: 9091.526
> [ 591] ...................................... -- risk: 9036.982
> [ 631] ...................................... -- risk: 8985.181
> [ 671] ...................................... -- risk: 8935.944
> [ 711] ...................................... -- risk: 8889.11
> [ 751] ...................................... -- risk: 8844.529
> [ 791] ...................................... -- risk: 8802.064
> [ 831] ...................................... -- risk: 8761.585
> [ 871] ...................................... -- risk: 8722.975
> [ 911] ...................................... -- risk: 8686.124
> [ 951] ...................................... -- risk: 8650.931
> [ 991] ...................................... -- risk: 8617.299
> [1'031] ...................................... -- risk: 8585.141
> [1'071] ...................................... -- risk: 8554.374
> [1'111] ...................................... -- risk: 8524.921
> [1'151] ...................................... -- risk: 8496.709
> [1'191] ...................................... -- risk: 8469.672
> [1'231] ...................................... -- risk: 8443.745
> [1'271] ...................................... -- risk: 8418.87
> [1'311] ...................................... -- risk: 8394.99
> [1'351] ...................................... -- risk: 8372.054
> [1'391] ...................................... -- risk: 8350.013
> [1'431] ...................................... -- risk: 8328.82
> [1'471] ...................................... -- risk: 8308.431
1515c1522
< Final risk: 8289.296
---
> Final risk: 8289.288
1518c1525
< -36.995015 -35.596204 -34.085121 -32.349492 -30.277044 -27.732668 -24.322700
---
> -36.995014 -35.596207 -34.085126 -32.349499 -30.277051 -27.732673 -24.322691
1520c1527
< -20.863436 -21.899785 -19.121790 -6.090486 2.438404 -4.941579 -7.667458
---
> -20.863408 -21.899798 -19.121835 -6.090471 2.438464 -4.941604 -7.667532
1522c1529
< 2.660098 16.107901 12.731691 6.129804 7.150931 15.682223 30.314956
---
> 2.660072 16.107960 12.731713 6.129780 7.150886 15.682172 30.314925
1524c1531
< 47.848845 52.733366 46.576832
---
> 47.848885 52.733403 46.576792
1557,1560c1564,1567
< [1] -0.02478712 -0.01925256 0.07735509 0.24268927 0.39127892 0.49333022
< [7] 0.58205157 0.65523850 0.67973447 0.64955713 0.60211201 0.54410925
< [13] 0.44971269 0.34981917 0.33270627 0.36324092 0.37184590 0.37876605
< [19] 0.39836923 0.42301410 0.36842335 0.22804995
---
> [1] -0.02478725 -0.01925279 0.07735492 0.24268927 0.39127901 0.49333025
> [7] 0.58205156 0.65523852 0.67973446 0.64955704 0.60211196 0.54410924
> [13] 0.44971260 0.34981894 0.33270613 0.36324101 0.37184615 0.37876648
> [19] 0.39836988 0.42301499 0.36842422 0.22805053
1564c1571
< 3.775258
---
> 3.775259
1579,1582c1586,1589
< [1] -0.02478712 -0.01925256 0.07735509 0.24268927 0.39127892 0.49333022
< [7] 0.58205157 0.65523850 0.67973447 0.64955713 0.60211201 0.54410925
< [13] 0.44971269 0.34981917 0.33270627 0.36324092 0.37184590 0.37876605
< [19] 0.39836923 0.42301410 0.36842335 0.22804995
---
> [1] -0.02478725 -0.01925279 0.07735492 0.24268927 0.39127901 0.49333025
> [7] 0.58205156 0.65523852 0.67973446 0.64955704 0.60211196 0.54410924
> [13] 0.44971260 0.34981894 0.33270613 0.36324101 0.37184615 0.37876648
> [19] 0.39836988 0.42301499 0.36842422 0.22805053
1586c1593
< 3.775258
---
> 3.775259
1604,1607c1611,1614
< [1] -0.02478712 -0.01925256 0.07735509 0.24268927 0.39127892 0.49333022
< [7] 0.58205157 0.65523850 0.67973447 0.64955713 0.60211201 0.54410925
< [13] 0.44971269 0.34981917 0.33270627 0.36324092 0.37184590 0.37876605
< [19] 0.39836923 0.42301410 0.36842335 0.22804995
---
> [1] -0.02478725 -0.01925279 0.07735492 0.24268927 0.39127901 0.49333025
> [7] 0.58205156 0.65523852 0.67973446 0.64955704 0.60211196 0.54410924
> [13] 0.44971260 0.34981894 0.33270613 0.36324101 0.37184615 0.37876648
> [19] 0.39836988 0.42301499 0.36842422 0.22805053
1611c1618
< 3.775258
---
> 3.775259
2218c2225
< 1093.549
---
> 1093.545
2698c2705
< 140.4454
---
> 140.4455
OK
** running examples for arch 'x64' ... OK
** checking differences from 'mboost-Ex_x64.Rout' to 'mboost-Ex.Rout.save' ...
1195a1196,1202
>
> Attaching package: 'Matrix'
>
> The following object(s) are masked from 'package:base':
>
> det
>
OK
- checking for unstated dependencies in tests ... OK
- checking tests ...
** running tests for arch 'i386' OK
Running 'birds_Biometrics.R'
Comparing 'birds_Biometrics.Rout' to 'birds_Biometrics.Rout.save' ...148c148
< 0.501901964 -0.001984263
---
> 0.501901966 -0.001984263
181c181
< [ 161] ...................................... -- risk: 130.305
---
> [ 161] ...................................... -- risk: 130.3049
198c198
< 0.778022842 -0.002811598
---
> 0.778022823 -0.002811598
202c202
< 0.59371225 -0.01241289
---
> 0.59371220 -0.01241289
210c210
< -1.71264919 0.01108683
---
> -1.71264915 0.01108683
231c231
< [ 121] ...................................... -- risk: 460.4985
---
> [ 121] ...................................... -- risk: 460.4984
234,236c234,236
< [ 241] ...................................... -- risk: 456.1802
< [ 281] ...................................... -- risk: 455.1545
< [ 321] ...................................... -- risk: 454.2507
---
> [ 241] ...................................... -- risk: 456.1801
> [ 281] ...................................... -- risk: 455.1544
> [ 321] ...................................... -- risk: 454.2506
254,265c254,265
< [ 1] ...................................... -- risk: 502.0303
< [ 41] ...................................... -- risk: 494.1493
< [ 81] ...................................... -- risk: 490.0277
< [ 121] ...................................... -- risk: 487.4496
< [ 161] ...................................... -- risk: 485.6646
< [ 201] ...................................... -- risk: 484.3156
< [ 241] ...................................... -- risk: 483.2211
< [ 281] ...................................... -- risk: 482.3221
< [ 321] ...................................... -- risk: 481.5232
< [ 361] ...................................... -- risk: 480.7767
< [ 401] ...................................... -- risk: 480.0901
< [ 441] ...................................... -- risk: 479.5037
---
> [ 1] ...................................... -- risk: 502.0305
> [ 41] ...................................... -- risk: 494.1495
> [ 81] ...................................... -- risk: 490.0279
> [ 121] ...................................... -- risk: 487.4498
> [ 161] ...................................... -- risk: 485.6648
> [ 201] ...................................... -- risk: 484.3158
> [ 241] ...................................... -- risk: 483.2213
> [ 281] ...................................... -- risk: 482.3224
> [ 321] ...................................... -- risk: 481.5234
> [ 361] ...................................... -- risk: 480.7769
> [ 401] ...................................... -- risk: 480.0903
> [ 441] ...................................... -- risk: 479.5039
267c267
< Final risk: 479.2248
---
> Final risk: 479.225
Running 'bugfixes.R'
Comparing 'bugfixes.Rout' to 'bugfixes.Rout.save' ...5a6,12
>
> Attaching package: 'Matrix'
>
> The following object(s) are masked from 'package:base':
>
> det
>
599c606
< Package 'spam' is loaded. Spam version 0.28-0 (2012-01-11).
---
> Package 'spam' is loaded. Spam version 0.27-0 (2011-08-17).
Running 'regtest-baselearner.R'
Comparing 'regtest-baselearner.Rout' to 'regtest-baselearner.Rout.save' ...16a17,23
>
> Attaching package: 'Matrix'
>
> The following object(s) are masked from 'package:base':
>
> det
>
339,340c346,347
< [6] -0.220643444 0.154919020 -0.300950310 -0.873054990 -0.519028732
< [11] 0.320637178 -0.303918058 -0.610811536 -0.686367706 0.342235455
---
> [6] -0.220643444 0.154919020 -0.300950310 -0.873054989 -0.519028732
> [11] 0.320637178 -0.303918057 -0.610811536 -0.686367706 0.342235455
356c363
< [91] 0.429416562 -0.011876975 -0.009186625 -0.599968165 0.438317733
---
> [91] 0.429416562 -0.011876975 -0.009186625 -0.599968164 0.438317732
433c440
< [1] -0.9167356
---
> [1] -0.9167353
Running 'regtest-blackboost.R'
Comparing 'regtest-blackboost.Rout' to 'regtest-blackboost.Rout.save' ...53,67c53,67
< 1 74.4121 nan 0.1000 nan
< 2 65.6474 nan 0.1000 nan
< 3 58.7034 nan 0.1000 nan
< 4 52.6088 nan 0.1000 nan
< 5 47.5788 nan 0.1000 nan
< 6 43.1559 nan 0.1000 nan
< 7 39.3997 nan 0.1000 nan
< 8 35.9511 nan 0.1000 nan
< 9 33.1632 nan 0.1000 nan
< 10 30.6850 nan 0.1000 nan
< 100 6.8694 nan 0.1000 nan
< 200 5.0890 nan 0.1000 nan
< 300 3.9605 nan 0.1000 nan
< 400 3.2681 nan 0.1000 nan
< 500 2.7537 nan 0.1000 nan
---
> 1 74.4121 -nan 0.1000 -nan
> 2 65.6474 -nan 0.1000 -nan
> 3 58.7034 -nan 0.1000 -nan
> 4 52.6088 -nan 0.1000 -nan
> 5 47.5788 -nan 0.1000 -nan
> 6 43.1559 -nan 0.1000 -nan
> 7 39.3997 -nan 0.1000 -nan
> 8 35.9511 -nan 0.1000 -nan
> 9 33.1632 -nan 0.1000 -nan
> 10 30.6850 -nan 0.1000 -nan
> 100 6.8694 -nan 0.1000 -nan
> 200 5.0890 -nan 0.1000 -nan
> 300 3.9605 -nan 0.1000 -nan
> 400 3.2681 -nan 0.1000 -nan
> 500 2.7537 -nan 0.1000 -nan
Running 'regtest-family.R'
Comparing 'regtest-family.Rout' to 'regtest-family.Rout.save' ... OK
Running 'regtest-gamboost.R'
Comparing 'regtest-gamboost.Rout' to 'regtest-gamboost.Rout.save' ...36c36
< [1] 6.625437
---
> [1] 6.625438
38c38
< Degrees of freedom (for mstop = 34): 5.056188
---
> Degrees of freedom (for mstop = 34): 5.056199
208c208
< [12,] 0.3426994
---
> [12,] 0.3426993
224,235c224,235
< [1,] 5.059375e-01 9.071417e-01 0.9992658
< [2,] 5.963551e-02 6.681175e-01 0.9969654
< [3,] 4.438008e-03 4.607472e-01 0.9941774
< [4,] 7.105703e-05 2.550525e-01 0.9897566
< [5,] 3.469722e-16 6.147551e-03 0.9623562
< [6,] 1.012072e-27 1.376472e-04 0.9351947
< [7,] 2.348574e-40 2.145802e-06 0.9063236
< [8,] 7.383737e-58 6.731226e-09 0.8677950
< [9,] 1.953648e-78 7.669664e-12 0.8245871
< [10,] 6.155754e-102 3.335810e-15 0.7778646
< [11,] 1.619543e-141 7.275178e-21 0.7050833
< [12,] 4.904272e-189 1.161265e-27 0.6266419
---
> [1,] 5.059374e-01 9.071417e-01 0.9992658
> [2,] 5.963542e-02 6.681175e-01 0.9969654
> [3,] 4.437993e-03 4.607471e-01 0.9941774
> [4,] 7.105658e-05 2.550524e-01 0.9897566
> [5,] 3.469611e-16 6.147540e-03 0.9623562
> [6,] 1.012013e-27 1.376467e-04 0.9351947
> [7,] 2.348370e-40 2.145790e-06 0.9063236
> [8,] 7.382807e-58 6.731171e-09 0.8677950
> [9,] 1.953311e-78 7.669578e-12 0.8245871
> [10,] 6.154361e-102 3.335760e-15 0.7778646
> [11,] 1.619033e-141 7.275027e-21 0.7050833
> [12,] 4.902193e-189 1.161233e-27 0.6266419
Running 'regtest-glmboost.R'
Comparing 'regtest-glmboost.Rout' to 'regtest-glmboost.Rout.save' ... OK
Running 'regtest-hatmatrix.R'
Comparing 'regtest-hatmatrix.Rout' to 'regtest-hatmatrix.Rout.save' ... OK
** running tests for arch 'x64' OK
Running 'birds_Biometrics.R'
Comparing 'birds_Biometrics.Rout' to 'birds_Biometrics.Rout.save' ...181c181
< [ 161] ...................................... -- risk: 130.305
---
> [ 161] ...................................... -- risk: 130.3049
198c198
< 0.778022842 -0.002811598
---
> 0.778022823 -0.002811598
202c202
< 0.59371225 -0.01241289
---
> 0.59371220 -0.01241289
210c210
< -1.71264919 0.01108683
---
> -1.71264915 0.01108683
260c260
< [ 241] ...................................... -- risk: 483.2214
---
> [ 241] ...................................... -- risk: 483.2213
263c263
< [ 361] ...................................... -- risk: 480.777
---
> [ 361] ...................................... -- risk: 480.7769
Running 'bugfixes.R'
Comparing 'bugfixes.Rout' to 'bugfixes.Rout.save' ...5a6,12
>
> Attaching package: 'Matrix'
>
> The following object(s) are masked from 'package:base':
>
> det
>
599c606
< Package 'spam' is loaded. Spam version 0.28-0 (2012-01-11).
---
> Package 'spam' is loaded. Spam version 0.27-0 (2011-08-17).
Running 'regtest-baselearner.R'
Comparing 'regtest-baselearner.Rout' to 'regtest-baselearner.Rout.save' ...16a17,23
>
> Attaching package: 'Matrix'
>
> The following object(s) are masked from 'package:base':
>
> det
>
Running 'regtest-blackboost.R'
Comparing 'regtest-blackboost.Rout' to 'regtest-blackboost.Rout.save' ...53,67c53,67
< 1 74.4121 nan 0.1000 nan
< 2 65.6474 nan 0.1000 nan
< 3 58.7034 nan 0.1000 nan
< 4 52.6088 nan 0.1000 nan
< 5 47.5788 nan 0.1000 nan
< 6 43.1559 nan 0.1000 nan
< 7 39.3997 nan 0.1000 nan
< 8 35.9511 nan 0.1000 nan
< 9 33.1632 nan 0.1000 nan
< 10 30.6850 nan 0.1000 nan
< 100 6.8694 nan 0.1000 nan
< 200 5.0890 nan 0.1000 nan
< 300 3.9605 nan 0.1000 nan
< 400 3.2681 nan 0.1000 nan
< 500 2.7537 nan 0.1000 nan
---
> 1 74.4121 -nan 0.1000 -nan
> 2 65.6474 -nan 0.1000 -nan
> 3 58.7034 -nan 0.1000 -nan
> 4 52.6088 -nan 0.1000 -nan
> 5 47.5788 -nan 0.1000 -nan
> 6 43.1559 -nan 0.1000 -nan
> 7 39.3997 -nan 0.1000 -nan
> 8 35.9511 -nan 0.1000 -nan
> 9 33.1632 -nan 0.1000 -nan
> 10 30.6850 -nan 0.1000 -nan
> 100 6.8694 -nan 0.1000 -nan
> 200 5.0890 -nan 0.1000 -nan
> 300 3.9605 -nan 0.1000 -nan
> 400 3.2681 -nan 0.1000 -nan
> 500 2.7537 -nan 0.1000 -nan
Running 'regtest-family.R'
Comparing 'regtest-family.Rout' to 'regtest-family.Rout.save' ... OK
Running 'regtest-gamboost.R'
Comparing 'regtest-gamboost.Rout' to 'regtest-gamboost.Rout.save' ... OK
Running 'regtest-glmboost.R'
Comparing 'regtest-glmboost.Rout' to 'regtest-glmboost.Rout.save' ... OK
Running 'regtest-hatmatrix.R'
Comparing 'regtest-hatmatrix.Rout' to 'regtest-hatmatrix.Rout.save' ... OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in 'inst/doc' ... OK
- checking running R code from vignettes ... OK
- checking re-building of vignette PDFs ... OK
- checking PDF version of manual ... OK
NOTE: There were 4 notes.
See
'd:/Rcompile/CRANpkg/local/2.15/mboost.Rcheck/00check.log'
for details.