- using R Under development (unstable) (2012-02-27 r58511)
- using platform: x86_64-pc-mingw32 (64-bit)
- using session charset: ISO8859-1
- checking for file 'ipred/DESCRIPTION' ... OK
- this is package 'ipred' version '0.8-13'
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking whether package 'ipred' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
- loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... NOTE
File 'd:/Rcompile/CRANpkg/lib/2.15/ipred/libs/i386/ipred.dll':
Found 'abort', possibly from 'abort' (C)
File 'd:/Rcompile/CRANpkg/lib/2.15/ipred/libs/x64/ipred.dll':
Found 'abort', possibly from 'abort' (C)
Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console. The detected symbols
are linked into the code but might come from libraries and not actually
be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
- checking sizes of PDF files under 'inst/doc' ... OK
- checking installed files from 'inst/doc' ... OK
- checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
- checking for unstated dependencies in tests ... OK
- checking tests ...
** running tests for arch 'i386' OK
Running 'ipred-bugs.R'
Comparing 'ipred-bugs.Rout' to 'ipred-bugs.Rout.save' ... OK
Running 'ipred-segfault.R'
Comparing 'ipred-segfault.Rout' to 'ipred-segfault.Rout.save' ... OK
Running 'ipred-smalltest.R'
Comparing 'ipred-smalltest.Rout' to 'ipred-smalltest.Rout.save' ... OK
Running 'ipred-tests.R'
Comparing 'ipred-tests.Rout' to 'ipred-tests.Rout.save' ...777,779d776
< > proc.time()
< user system elapsed
< 20.95 0.29 21.24
** running tests for arch 'x64' OK
Running 'ipred-bugs.R'
Comparing 'ipred-bugs.Rout' to 'ipred-bugs.Rout.save' ...167c167
< [1] 0.949367
---
> [1] 0.9612632
169c169
< [1] 0.9148273
---
> [1] 0.9073771
Running 'ipred-segfault.R'
Comparing 'ipred-segfault.Rout' to 'ipred-segfault.Rout.save' ...31c31
< Out-of-bag estimate of misclassification error: 0.195
---
> Out-of-bag estimate of misclassification error: 0.185
34c34
< [1] 1 1 1 2 2 2 1 1 1 1
---
> [1] 1 1 1 1 2 2 1 1 1 1
52c52
< [1] 1 1 1 1 1 2 1 2 1 2
---
> [1] 1 1 1 1 2 2 1 2 1 2
58c58
< [1] 1 1 1 1 2 2 1 2 1 2
---
> [1] 1 1 1 1 1 2 1 2 1 2
69c69
< [8,] 0.1 0.9
---
> [8,] 0.0 1.0
81c81
< [8,] 0.1 0.9
---
> [8,] 0.0 1.0
86,95c86,95
< [1,] 1.000000000 0.000000000
< [2,] 0.996441281 0.003558719
< [3,] 1.000000000 0.000000000
< [4,] 1.000000000 0.000000000
< [5,] 0.484359233 0.515640767
< [6,] 0.000000000 1.000000000
< [7,] 1.000000000 0.000000000
< [8,] 0.001138952 0.998861048
< [9,] 1.000000000 0.000000000
< [10,] 0.000000000 1.000000000
---
> [1,] 1.0000000 0.000000000
> [2,] 0.9976303 0.002369668
> [3,] 1.0000000 0.000000000
> [4,] 1.0000000 0.000000000
> [5,] 0.5311111 0.468888889
> [6,] 0.0000000 1.000000000
> [7,] 1.0000000 0.000000000
> [8,] 0.0000000 1.000000000
> [9,] 1.0000000 0.000000000
> [10,] 0.0000000 1.000000000
108c108
< Misclassification error: 0.035
---
> Misclassification error: 0.04
149c149
< Misclassification error: 0.11
---
> Misclassification error: 0.095
160c160
< Misclassification error: 0.07
---
> Misclassification error: 0.085
172,173c172,173
< Misclassification error: 0.0388
< Standard deviation: 0.0029
---
> Misclassification error: 0.0391
> Standard deviation: 0.0027
185c185
< Misclassification error: 0.0332
---
> Misclassification error: 0.0333
203c203
< Out-of-bag estimate of root mean squared error: 3.5077
---
> Out-of-bag estimate of root mean squared error: 3.5394
206,207c206,207
< [1] 11.89640 13.53735 10.67191 11.90026 13.67112 10.47250 15.93565 15.76868
< [9] 17.64140 17.54231
---
> [1] 17.52261 10.07663 12.96417 13.86483 14.07599 16.60311 NA 21.18277
> [9] 16.92367 NA
210,211c210,211
< [1] 21.13210 17.05773 14.36727 13.23833 11.40763 12.36486 19.00303 14.98115
< [9] 19.09551 17.23454
---
> [1] 17.988182 11.996216 19.349240 16.608268 11.051775 15.140120 10.996003
> [8] 9.471202 14.869813 13.846185
213,214c213,214
< [1] 21.13210 17.05773 14.36727 13.23833 11.40763 12.36486 19.00303 14.98115
< [9] 19.09551 17.23454
---
> [1] 17.988182 11.996216 19.349240 16.608268 11.051775 15.140120 10.996003
> [8] 9.471202 14.869813 13.846185
216,217c216,217
< [1] 21.27480 16.62497 14.46233 13.44548 11.68707 12.79660 19.37107 15.25045
< [9] 19.05139 18.08567
---
> [1] 18.163683 12.034196 19.291462 16.861436 11.071367 15.258870 11.600688
> [8] 9.460784 14.971003 13.922154
225c225
< Root mean squared error: 2.5998
---
> Root mean squared error: 2.6627
236c236
< Root mean squared error: 2.6421
---
> Root mean squared error: 2.5703
264c264
< Root mean squared error: 2.6975
---
> Root mean squared error: 2.6721
286c286
< 154.0000 154.0000 154.0000 154.0000 0.0858 0.0769 0.1111
---
> 183.0000 183.0000 183.0000 183.0000 0.0421 0.0342 0.0475
292c292
< 146.0000 146.0000 146.0000 146.0000 0.0673 0.0544 0.1145
---
> 130.000 130.000 130.000 130.000 0.501 0.489 0.532
298c298
< 122.000 122.000 122.000 122.000 0.306 0.274 0.377
---
> 160.0000 160.0000 160.0000 160.0000 0.0428 0.0359 0.0568
304c304
< 119.0000 119.0000 119.0000 119.0000 0.0986 0.0807 0.1145
---
> 152.0000 152.0000 152.0000 152.0000 0.0475 0.0378 0.0514
310c310
< 150.0000 150.0000 150.0000 150.0000 0.0242 0.0169 0.0411
---
> 130.000 130.000 130.000 130.000 0.489 0.399 0.532
316c316
< 136.0000 136.0000 136.0000 136.0000 0.0412 0.0342 0.0522
---
> 149.0000 149.0000 149.0000 149.0000 0.0302 0.0172 0.0342
322c322
< 122.000 122.000 122.000 122.000 0.306 0.274 0.377
---
> 141.000 141.000 141.000 141.000 0.489 0.398 0.532
328c328
< 149.0000 149.0000 149.0000 149.0000 0.0552 0.0544 0.0691
---
> 160.0000 160.0000 160.0000 160.0000 0.0315 0.0187 0.0359
334c334
< 123.000 123.000 123.000 123.000 0.366 0.317 0.399
---
> 169.000 169.000 169.000 169.000 0.175 0.137 0.209
340c340
< 163.0000 163.0000 163.0000 163.0000 0.0522 0.0444 0.0552
---
> 132.0000 132.0000 132.0000 132.0000 0.1050 0.0718 0.1191
358c358
< Brier's score: 0.076
---
> Brier's score: 0.0955
371c371
< Brier's score: 0.0898
---
> Brier's score: 0.069
405,406c405,406
< [1] 19.884659 7.979953 15.136274 17.090984 10.593808 15.343204 17.641397
< [8] 12.360645 14.277689 10.893690
---
> [1] 6.440993 14.435812 10.847327 14.837533 13.010493 6.156936 20.132612
> [8] 6.879375 14.076470 16.636056
Running 'ipred-smalltest.R'
Comparing 'ipred-smalltest.Rout' to 'ipred-smalltest.Rout.save' ... OK
Running 'ipred-tests.R'
Comparing 'ipred-tests.Rout' to 'ipred-tests.Rout.save' ...741c741
< Out-of-bag estimate of misclassification error: 0.0366
---
> Out-of-bag estimate of misclassification error: 0.0381
749c749
< Out-of-bag estimate of root mean squared error: 3.9905
---
> Out-of-bag estimate of root mean squared error: 3.9809
756c756
< Out-of-bag estimate of root mean squared error: 2.8515
---
> Out-of-bag estimate of root mean squared error: 2.8832
765c765
< Out-of-bag estimate of Brier's score: 0.1969
---
> Out-of-bag estimate of Brier's score: 0.1927
773c773
< Out-of-bag estimate of misclassification error: 0.3551
---
> Out-of-bag estimate of misclassification error: 0.3271
777,779d776
< > proc.time()
< user system elapsed
< 23.19 0.37 23.74
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in 'inst/doc' ... OK
- checking running R code from vignettes ... OK
- checking re-building of vignette PDFs ... OK
- checking PDF version of manual ... OK
NOTE: There was 1 note.
See
'd:/Rcompile/CRANpkg/local/2.15/ipred.Rcheck/00check.log'
for details.