• using R Under development (unstable) (2012-02-24 r58481)
• using platform: x86_64-pc-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'exactRankTests/DESCRIPTION' ... OK
• this is package 'exactRankTests' version '0.8-22'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'exactRankTests' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• loading checks for arch 'x64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x64' ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ...
  ** running tests for arch 'i386' OK
  Running 'bugfix-tests.R'
  Comparing 'bugfix-tests.Rout' to 'bugfix-tests.Rout.save' ...5,7d4
  < Package 'exactRankTests' is no longer under development.
  < Please consider using package 'coin' instead.
  <
  Running 'dtest.R'
  Comparing 'dtest.Rout' to 'dtest.Rout.save' ...5,7d4
  < Package 'exactRankTests' is no longer under development.
  < Please consider using package 'coin' instead.
  <
  32,33c29,30
  < psignrank: 0.00213623 pperm: 0.00213623
  < psignrank: 2.563e-06 pperm: 2.563e-06
  ---
  > psignrank: 0.002136230 pperm: 0.002136230
  > psignrank: 2.563000e-06 pperm: 2.563000e-06
  105c102
  < Max difference: 1.110223e-16
  ---
  > Max difference: 2.775558e-17
  Running 'exactRankTests-Ex.R'
  Comparing 'exactRankTests-Ex.Rout' to 'exactRankTests-Ex.Rout.save' ...33,35d32
  < Package 'exactRankTests' is no longer under development.
  < Please consider using package 'coin' instead.
  <
  93,94c90
  < In ansari.test.default(ramsay, jung.parekh) :
  < cannot compute exact p-value with ties
  ---
  > cannot compute exact p-value with ties in: ansari.test.default(ramsay, jung.parekh)
  140c136
  < T = 402, p-value = 0.104
  ---
  > T = 402, p-value = 0.1040
  156c152
  < T = 402, p-value = 0.107
  ---
  > T = 402, p-value = 0.1070
  196c192
  < [1] 0.0376
  ---
  > [1] 0.0467
  200c196
  < [1] 0.0705
  ---
  > [1] 0.0791
  294c290
  < alternative hypothesis: true location shift is less than 0
  ---
  > alternative hypothesis: true mu is less than 0
  326,327c322
  < In findfact(scores - min(scores) + 1, m, tol) :
  < cannot hold tol, tolerance: 0.010292
  ---
  > cannot hold tol, tolerance: 0.010292 in: findfact(scores - min(scores) + 1, m, tol)
  333,334c328
  < In findfact(scores - min(scores) + 1, m, tol) :
  < cannot hold tol, tolerance: 0.010292
  ---
  > cannot hold tol, tolerance: 0.010292 in: findfact(scores - min(scores) + 1, m, tol)
  445c439,441
  < There were 32 warnings (use warnings() to see them)
  ---
  > Warning messages:
  > 1: cannot hold tol, tolerance: 0.010019 in: findfact(scores - min(scores) + 1, m, tol)
  > 2: cannot hold tol, tolerance: 0.010067 in: findfact(scores - min(scores) + 1, m, tol)
  566c562
  < [1] 0.0307573
  ---
  > [1] 0.03075730
  568,569c564
  < In findfact(scores - min(scores) + 1, m, tol) :
  < cannot hold tol, tolerance: 0.047123
  ---
  > cannot hold tol, tolerance: 0.047123 in: findfact(scores - min(scores) + 1, m, tol)
  630c625
  < T = 61, p-value = 0.0118
  ---
  > T = 61, p-value = 0.01180
  Running 'exactRankTests-ExOLD.R'
  Comparing 'exactRankTests-ExOLD.Rout' to 'exactRankTests-ExOLD.Rout.save' ...33,35d32
  < Package 'exactRankTests' is no longer under development.
  < Please consider using package 'coin' instead.
  <
  96c93
  < alternative hypothesis: true location shift is less than 0
  ---
  > alternative hypothesis: true mu is less than 0
  126,127c123
  < In findfact(scores - min(scores) + 1, m, tol) :
  < cannot hold tol, tolerance: 0.010292
  ---
  > cannot hold tol, tolerance: 0.010292 in: findfact(scores - min(scores) + 1, m, tol)
  133,134c129
  < In findfact(scores - min(scores) + 1, m, tol) :
  < cannot hold tol, tolerance: 0.010292
  ---
  > cannot hold tol, tolerance: 0.010292 in: findfact(scores - min(scores) + 1, m, tol)
  228c223
  < T = 61, p-value = 0.0118
  ---
  > T = 61, p-value = 0.01180
  248c243
  < T = 402, p-value = 0.104
  ---
  > T = 402, p-value = 0.1040
  273c268
  < T = 402, p-value = 0.107
  ---
  > T = 402, p-value = 0.1070
  358c353
  < alternative hypothesis: true location is not equal to 0
  ---
  > alternative hypothesis: true mu is not equal to 0
  423d417
  < + we$null.value <- NULL
  426d419
  < + wt$null.value <- NULL
  434d426
  < + we$null.value <- NULL
  437d428
  < + wt$null.value <- NULL
  457c448
  < alternative hypothesis: true location shift is not equal to 0
  ---
  > alternative hypothesis: true mu is not equal to 0
  481c472
  < alternative hypothesis: true location is not equal to 0
  ---
  > alternative hypothesis: true mu is not equal to 0
  Running 'reg-tests.R'
  Running 'stest.R'
  Comparing 'stest.Rout' to 'stest.Rout.save' ...5,7d4
  < Package 'exactRankTests' is no longer under development.
  < Please consider using package 'coin' instead.
  <
  ** running tests for arch 'x64' OK
  Running 'bugfix-tests.R'
  Comparing 'bugfix-tests.Rout' to 'bugfix-tests.Rout.save' ...5,7d4
  < Package 'exactRankTests' is no longer under development.
  < Please consider using package 'coin' instead.
  <
  Running 'dtest.R'
  Comparing 'dtest.Rout' to 'dtest.Rout.save' ...5,7d4
  < Package 'exactRankTests' is no longer under development.
  < Please consider using package 'coin' instead.
  <
  32,33c29,30
  < psignrank: 0.00213623 pperm: 0.00213623
  < psignrank: 2.563e-06 pperm: 2.563e-06
  ---
  > psignrank: 0.002136230 pperm: 0.002136230
  > psignrank: 2.563000e-06 pperm: 2.563000e-06
  105c102
  < Max difference: 5.689893e-16
  ---
  > Max difference: 2.775558e-17
  Running 'exactRankTests-Ex.R'
  Comparing 'exactRankTests-Ex.Rout' to 'exactRankTests-Ex.Rout.save' ...33,35d32
  < Package 'exactRankTests' is no longer under development.
  < Please consider using package 'coin' instead.
  <
  93,94c90
  < In ansari.test.default(ramsay, jung.parekh) :
  < cannot compute exact p-value with ties
  ---
  > cannot compute exact p-value with ties in: ansari.test.default(ramsay, jung.parekh)
  140c136
  < T = 402, p-value = 0.104
  ---
  > T = 402, p-value = 0.1040
  156c152
  < T = 402, p-value = 0.107
  ---
  > T = 402, p-value = 0.1070
  196c192
  < [1] 0.0376
  ---
  > [1] 0.0467
  200c196
  < [1] 0.0705
  ---
  > [1] 0.0791
  294c290
  < alternative hypothesis: true location shift is less than 0
  ---
  > alternative hypothesis: true mu is less than 0
  326,327c322
  < In findfact(scores - min(scores) + 1, m, tol) :
  < cannot hold tol, tolerance: 0.010292
  ---
  > cannot hold tol, tolerance: 0.010292 in: findfact(scores - min(scores) + 1, m, tol)
  333,334c328
  < In findfact(scores - min(scores) + 1, m, tol) :
  < cannot hold tol, tolerance: 0.010292
  ---
  > cannot hold tol, tolerance: 0.010292 in: findfact(scores - min(scores) + 1, m, tol)
  445c439,441
  < There were 32 warnings (use warnings() to see them)
  ---
  > Warning messages:
  > 1: cannot hold tol, tolerance: 0.010019 in: findfact(scores - min(scores) + 1, m, tol)
  > 2: cannot hold tol, tolerance: 0.010067 in: findfact(scores - min(scores) + 1, m, tol)
  566c562
  < [1] 0.0307573
  ---
  > [1] 0.03075730
  568,569c564
  < In findfact(scores - min(scores) + 1, m, tol) :
  < cannot hold tol, tolerance: 0.047123
  ---
  > cannot hold tol, tolerance: 0.047123 in: findfact(scores - min(scores) + 1, m, tol)
  630c625
  < T = 61, p-value = 0.0118
  ---
  > T = 61, p-value = 0.01180
  Running 'exactRankTests-ExOLD.R'
  Comparing 'exactRankTests-ExOLD.Rout' to 'exactRankTests-ExOLD.Rout.save' ...33,35d32
  < Package 'exactRankTests' is no longer under development.
  < Please consider using package 'coin' instead.
  <
  96c93
  < alternative hypothesis: true location shift is less than 0
  ---
  > alternative hypothesis: true mu is less than 0
  126,127c123
  < In findfact(scores - min(scores) + 1, m, tol) :
  < cannot hold tol, tolerance: 0.010292
  ---
  > cannot hold tol, tolerance: 0.010292 in: findfact(scores - min(scores) + 1, m, tol)
  133,134c129
  < In findfact(scores - min(scores) + 1, m, tol) :
  < cannot hold tol, tolerance: 0.010292
  ---
  > cannot hold tol, tolerance: 0.010292 in: findfact(scores - min(scores) + 1, m, tol)
  228c223
  < T = 61, p-value = 0.0118
  ---
  > T = 61, p-value = 0.01180
  248c243
  < T = 402, p-value = 0.104
  ---
  > T = 402, p-value = 0.1040
  273c268
  < T = 402, p-value = 0.107
  ---
  > T = 402, p-value = 0.1070
  358c353
  < alternative hypothesis: true location is not equal to 0
  ---
  > alternative hypothesis: true mu is not equal to 0
  423d417
  < + we$null.value <- NULL
  426d419
  < + wt$null.value <- NULL
  434d426
  < + we$null.value <- NULL
  437d428
  < + wt$null.value <- NULL
  457c448
  < alternative hypothesis: true location shift is not equal to 0
  ---
  > alternative hypothesis: true mu is not equal to 0
  481c472
  < alternative hypothesis: true location is not equal to 0
  ---
  > alternative hypothesis: true mu is not equal to 0
  Running 'reg-tests.R'
  Running 'stest.R'
  Comparing 'stest.Rout' to 'stest.Rout.save' ...5,7d4
  < Package 'exactRankTests' is no longer under development.
  < Please consider using package 'coin' instead.
  <
• checking PDF version of manual ... OK