• using R Under development (unstable) (2012-02-27 r58511)
• using platform: x86_64-pc-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'cobs/DESCRIPTION' ... OK
• this is package 'cobs' version '1.2-2'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'cobs' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• loading checks for arch 'x64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  plot.cobs: warning in deparse(x$call, width.cut = 100): partial
  argument match of 'width.cut' to 'width.cutoff'
  plot.cobs: warning in formatC(x$lambda, dig = 3): partial argument
  match of 'dig' to 'digits'
  summary.cobs: warning in .print.part(object$coef, nMin = 7, nam =
  "coef", digits = digits): partial argument match of 'nam' to 'namX'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... NOTE
  File 'd:/Rcompile/CRANpkg/lib/2.15/cobs/libs/i386/cobs.dll':
  Found 'abort', possibly from 'abort' (C)
  File 'd:/Rcompile/CRANpkg/lib/2.15/cobs/libs/x64/cobs.dll':
  Found 'abort', possibly from 'abort' (C)
  
  Compiled code should not call functions which might terminate R nor
  write to stdout/stderr instead of to the console. The detected symbols
  are linked into the code but might come from libraries and not actually
  be called.
  
  See 'Writing portable packages' in the 'Writing R Extensions' manual.
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x64' ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ...
  ** running tests for arch 'i386' OK
  Running 'ex1.R'
  Comparing 'ex1.Rout' to 'ex1.Rout.save' ...409c409,410
  < [1,] 2.30776 16 18 250.3 7.5999 11
  ---
  > [1,] 2.30776 16 18 250.300 7.59990 11
  > [2,] 4.51708 16 18 258.955 1.78571 6
  447,461c448,462
  < 1 -18.0106882 -9.829673 6.86289 23.5555 31.7365
  < 2 -15.9869410 -8.308680 7.35806 23.0248 30.7031
  < 3 -14.7253888 -7.299594 7.85201 23.0036 30.4294
  < 4 -14.0304363 -6.671151 8.34475 23.3607 30.7199
  < 5 -13.6842226 -6.277146 8.83627 23.9497 31.3568
  < 6 -13.4881963 -5.984331 9.32657 24.6375 32.1413
  < 7 -13.2846850 -5.686894 9.81566 25.3182 32.9160
  < 8 -12.9604493 -5.308839 10.30352 25.9159 33.5675
  < 9 -12.4418507 -4.800749 10.79017 26.3811 34.0222
  < 10 -11.6889861 -4.135844 11.27560 26.6871 34.2402
  < 11 -10.6923969 -3.307777 11.75982 26.8274 34.2120
  < 12 -9.4739638 -2.331231 12.24282 26.8169 33.9596
  < 13 -8.0930594 -1.246052 12.72460 26.6952 33.5422
  < 14 -6.6587118 -0.125408 13.20516 26.5357 33.0690
  < 15 -5.3461742 0.913089 13.68450 26.4559 32.7152
  ---
  > 1 -18.0106904 -9.829675 6.86289 23.5554 31.7365
  > 2 -15.9869429 -8.308682 7.35806 23.0248 30.7031
  > 3 -14.7253905 -7.299596 7.85201 23.0036 30.4294
  > 4 -14.0304378 -6.671153 8.34475 23.3607 30.7199
  > 5 -13.6842240 -6.277147 8.83627 23.9497 31.3568
  > 6 -13.4881974 -5.984332 9.32657 24.6375 32.1413
  > 7 -13.2846860 -5.686895 9.81565 25.3182 32.9160
  > 8 -12.9604501 -5.308840 10.30352 25.9159 33.5675
  > 9 -12.4418514 -4.800750 10.79017 26.3811 34.0222
  > 10 -11.6889866 -4.135844 11.27560 26.6871 34.2402
  > 11 -10.6923973 -3.307777 11.75982 26.8274 34.2120
  > 12 -9.4739641 -2.331232 12.24282 26.8169 33.9596
  > 13 -8.0930597 -1.246053 12.72459 26.6952 33.5422
  > 14 -6.6587120 -0.125409 13.20516 26.5357 33.0690
  > 15 -5.3461743 0.913089 13.68450 26.4559 32.7152
  463c464
  < 17 -3.5579639 2.427497 14.64024 26.8530 32.8385
  ---
  > 17 -3.5579640 2.427497 14.64024 26.8530 32.8385
  552c553
  < [1] 6.862889 10.368778 14.880952 17.119048 19.547619 22.166667 24.976190
  ---
  > [1] 6.862887 10.368778 14.880952 17.119048 19.547619 22.166667 24.976190
  569c570,573
  < [1,] 0.00279592 15 18 263.5 4 18
  ---
  > [1,] 0.00279592 15 18 263.50 4 18
  > [2,] 0.00547257 15 18 263.50 4 18
  > [3,] 0.30774511 12 18 263.50 4 18
  > [4,] 2.30776272 16 18 264.75 1 15
  603c607
  < $ ifl : int [1:25] 18 1 1 1 1 1 1 1 1 1 ...
  ---
  > $ ifl : int [1:25] 18 18 1 1 1 1 1 18 1 1 ...
  615c619
  < 8 -15.261611 -6.733216 10.66814 28.0695 36.5979
  ---
  > 8 -15.261611 -6.733215 10.66814 28.0695 36.5979
  882,883c886,887
  < Warning message:
  < In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
  ---
  > Warning messages:
  > 1: In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
  885a890,891
  > 2: In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
  > Check 'ifl'
  889a896,899
  >
  > **** ERROR in algorithm: ifl = 18
  >
  >
  893c903
  < R^2 = 95.93% ; empirical tau (over all): 245/500 = 0.49 (target tau= 0.5)
  ---
  > R^2 = 95.93% ; empirical tau (over all): 247/500 = 0.494 (target tau= 0.5)
  909c919
  < R^2 = 96.02% ; empirical tau (over all): 247/500 = 0.494 (target tau= 0.5)
  ---
  > R^2 = 96.02% ; empirical tau (over all): 248/500 = 0.496 (target tau= 0.5)
  1289c1299
  < [21] -1.82479e+00 3.65435e-11
  ---
  > [21] -1.82479e+00 3.65434e-11
  Running 'ex2-long.R'
  Comparing 'ex2-long.Rout' to 'ex2-long.Rout.save' ...30c30
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  176c176
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  308c308
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  446c446
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  584c584
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  719c719
  < [61] -0.0094285 432.6957870
  ---
  > [61] -0.0094285 432.6957858
  1356c1356
  < $ icyc : int 51
  ---
  > $ icyc : int 50
  1477c1477
  < [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84287
  ---
  > [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84235
  1484c1484
  < [1] 0.8153
  ---
  > [1] 0.81529
  1488c1488
  < [1] 0.81885
  ---
  > [1] 0.81881
  Running 'ex3.R'
  Comparing 'ex3.Rout' to 'ex3.Rout.save' ... OK
  Running 'multi-constr.R'
  Comparing 'multi-constr.Rout' to 'multi-constr.Rout.save' ...257,258d256
  < Warning message:
  < In cobs(x, y, constraint = "increase", pointwise = con) : Check 'ifl'
  Running 'pt-ex.R'
  Running 'roof.R'
  Comparing 'roof.Rout' to 'roof.Rout.save' ... OK
  Running 'small-ex.R'
  Comparing 'small-ex.Rout' to 'small-ex.Rout.save' ... OK
  Running 'spline-ex.R'
  Comparing 'spline-ex.Rout' to 'spline-ex.Rout.save' ... OK
  Running 'temp.R'
  Comparing 'temp.Rout' to 'temp.Rout.save' ... OK
  Running 'wind.R'
  Comparing 'wind.Rout' to 'wind.Rout.save' ...99c99
  < R^2 = 8.22% ; empirical tau (over all): 3287/6574 = 0.5 (target tau= 0.5)
  ---
  > R^2 = 8.22% ; empirical tau (over all): 3286/6574 = 0.4998479 (target tau= 0.5)
  239a240,242
  > Warning in cobs(day, speed, knots.add = TRUE, constraint = "periodic", nknots = 10, :
  > The algorithm has not converged after 100 iterations for at least one lambda
  > Check to make sure that your constraint is feasible
  376c379
  < empirical tau (over all): 658/6574 = 0.1000913 (target tau= 0.1)
  ---
  > empirical tau (over all): 657/6574 = 0.09993915 (target tau= 0.1)
  ** running tests for arch 'x64' OK
  Running 'ex1.R'
  Comparing 'ex1.Rout' to 'ex1.Rout.save' ...409c409,410
  < [1,] 2.30776 16 18 250.3 7.5999 11
  ---
  > [1,] 2.30776 16 18 250.300 7.59990 11
  > [2,] 4.51708 16 18 258.955 1.78571 6
  447,453c448,454
  < 1 -18.0106902 -9.829675 6.86289 23.5554 31.7365
  < 2 -15.9869427 -8.308682 7.35806 23.0248 30.7031
  < 3 -14.7253903 -7.299595 7.85201 23.0036 30.4294
  < 4 -14.0304377 -6.671152 8.34475 23.3607 30.7199
  < 5 -13.6842238 -6.277147 8.83627 23.9497 31.3568
  < 6 -13.4881973 -5.984332 9.32657 24.6375 32.1413
  < 7 -13.2846859 -5.686895 9.81565 25.3182 32.9160
  ---
  > 1 -18.0106904 -9.829675 6.86289 23.5554 31.7365
  > 2 -15.9869429 -8.308682 7.35806 23.0248 30.7031
  > 3 -14.7253905 -7.299596 7.85201 23.0036 30.4294
  > 4 -14.0304378 -6.671153 8.34475 23.3607 30.7199
  > 5 -13.6842240 -6.277147 8.83627 23.9497 31.3568
  > 6 -13.4881974 -5.984332 9.32657 24.6375 32.1413
  > 7 -13.2846860 -5.686895 9.81565 25.3182 32.9160
  569,572c570,573
  < [1,] 0.0107117 16 18 263.500 4.00000 18
  < [2,] 0.3077451 12 18 263.500 4.00000 18
  < [3,] 1.1790290 15 18 263.944 1.77778 16
  < [4,] 2.3077627 16 18 264.750 1.00000 15
  ---
  > [1,] 0.00279592 15 18 263.50 4 18
  > [2,] 0.00547257 15 18 263.50 4 18
  > [3,] 0.30774511 12 18 263.50 4 18
  > [4,] 2.30776272 16 18 264.75 1 15
  606c607
  < $ ifl : int [1:25] 1 1 18 1 1 1 1 18 1 18 ...
  ---
  > $ ifl : int [1:25] 18 18 1 1 1 1 1 18 1 1 ...
  885,886c886,887
  < Warning message:
  < In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
  ---
  > Warning messages:
  > 1: In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
  888a890,891
  > 2: In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
  > Check 'ifl'
  892a896,899
  >
  > **** ERROR in algorithm: ifl = 18
  >
  >
  896c903
  < R^2 = 95.93% ; empirical tau (over all): 246/500 = 0.492 (target tau= 0.5)
  ---
  > R^2 = 95.93% ; empirical tau (over all): 247/500 = 0.494 (target tau= 0.5)
  906,908d912
  < Warning message:
  < In cobs(x, y, "decrease", knots = ux, nknots = length(ux), degree = 1) :
  < Check 'ifl'
  912,915d915
  <
  < **** ERROR in algorithm: ifl = 18
  <
  <
  919c919
  < R^2 = 96.02% ; empirical tau (over all): 250/500 = 0.5 (target tau= 0.5)
  ---
  > R^2 = 96.02% ; empirical tau (over all): 248/500 = 0.496 (target tau= 0.5)
  1299c1299
  < [21] -1.82479e+00 3.65435e-11
  ---
  > [21] -1.82479e+00 3.65434e-11
  Running 'ex2-long.R'
  Comparing 'ex2-long.Rout' to 'ex2-long.Rout.save' ...30c30
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  176c176
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  308c308
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  446c446
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  584c584
  < $ x : num [1:200] -2.56 -2.14 -1.9 -1.81 -1.78 ...
  ---
  > $ x : num [1:200] -2.56 -2.14 -1.91 -1.81 -1.78 ...
  719c719
  < [61] -0.0094285 432.6957894
  ---
  > [61] -0.0094285 432.6957858
  1477c1477
  < [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84256
  ---
  > [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84235
  1484c1484
  < [1] 0.81533
  ---
  > [1] 0.81529
  1488c1488
  < [1] 0.81897
  ---
  > [1] 0.81881
  Running 'ex3.R'
  Comparing 'ex3.Rout' to 'ex3.Rout.save' ... OK
  Running 'multi-constr.R'
  Comparing 'multi-constr.Rout' to 'multi-constr.Rout.save' ...257,258d256
  < Warning message:
  < In cobs(x, y, constraint = "increase", pointwise = con) : Check 'ifl'
  Running 'pt-ex.R'
  Running 'roof.R'
  Comparing 'roof.Rout' to 'roof.Rout.save' ... OK
  Running 'small-ex.R'
  Comparing 'small-ex.Rout' to 'small-ex.Rout.save' ... OK
  Running 'spline-ex.R'
  Comparing 'spline-ex.Rout' to 'spline-ex.Rout.save' ... OK
  Running 'temp.R'
  Comparing 'temp.Rout' to 'temp.Rout.save' ... OK
  Running 'wind.R'
  Comparing 'wind.Rout' to 'wind.Rout.save' ...99c99
  < R^2 = 8.22% ; empirical tau (over all): 3287/6574 = 0.5 (target tau= 0.5)
  ---
  > R^2 = 8.22% ; empirical tau (over all): 3286/6574 = 0.4998479 (target tau= 0.5)
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  'd:/Rcompile/CRANpkg/local/2.15/cobs.Rcheck/00check.log'
  for details.