- using R Under development (unstable) (2012-02-27 r58511)
- using platform: x86_64-pc-mingw32 (64-bit)
- using session charset: ISO8859-1
- checking for file 'ade4/DESCRIPTION' ... OK
- this is package 'ade4' version '1.4-17'
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
- checking whether package 'ade4' can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
- loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
ade4toR: warning in read.table(fictab, h = FALSE): partial argument
match of 'h' to 'header'
ade4toR: warning in read.table(ficcolnames, h = FALSE): partial
argument match of 'h' to 'header'
ade4toR: warning in read.table(ficrownames, h = FALSE): partial
argument match of 'h' to 'header'
amova: warning in colnames(samples, do = FALSE): partial argument match
of 'do' to 'do.NULL'
area.plot: warning in cut.default(values, br0, include = TRUE, lab =
FALSE, right = TRUE): partial argument match of 'lab' to 'labels'
area.plot: warning in cut.default(values, br0, include = TRUE, lab =
FALSE, right = TRUE): partial argument match of 'include' to
'include.lowest'
area.util.class : contour2poly: warning in which(a == curnew, arr =
TRUE): partial argument match of 'arr' to 'arr.ind'
area.util.class : contour2poly: warning in
matrix(as.numeric(unlist(strsplit(points, "_"))), ncol = 2, byr =
TRUE): partial argument match of 'byr' to 'byrow'
area.util.contour: warning in matrix(res, ncol = 4, byr = TRUE):
partial argument match of 'byr' to 'byrow'
boxplot.acm: warning in sco.boxplot(x$l1[, xax], oritab[, 1:nvar], clab
= 1): partial argument match of 'clab' to 'clabel'
boxplot.acm: warning in sco.boxplot(x$l1[, xax], oritab[,
1:(nvar%/%2)], clab = 1.3): partial argument match of 'clab' to
'clabel'
boxplot.acm: warning in sco.boxplot(x$l1[, xax], oritab[, (nvar%/%2 +
1):nvar], clab = 1.3): partial argument match of 'clab' to 'clabel'
boxplot.acm: warning in sco.boxplot(x$l1[, xax], oritab[, 1:a0], clab =
1.6): partial argument match of 'clab' to 'clabel'
boxplot.acm: warning in sco.boxplot(x$l1[, xax], oritab[, (a0 + 1):(2 *
a0)], clab = 1.6): partial argument match of 'clab' to 'clabel'
boxplot.acm: warning in sco.boxplot(x$l1[, xax], oritab[, (2 * a0 +
1):nvar], clab = 1.6): partial argument match of 'clab' to 'clabel'
cailliez: warning in eigen(m1, only = TRUE): partial argument match of
'only' to 'only.values'
cailliez: warning in round(c, dig = 5): partial argument match of 'dig'
to 'digits'
costatis: warning in dudi.pca(t(ptaX$tab), center = FALSE, scan =
FALSE, nf = ptaX$nf): partial argument match of 'scan' to 'scannf'
costatis: warning in dudi.pca(t(ptaY$tab), center = FALSE, scan =
FALSE, nf = ptaY$nf): partial argument match of 'scan' to 'scannf'
dist.quant: warning in eigen(dfcov, sym = TRUE): partial argument match
of 'sym' to 'symmetric'
dotcircle: warning in symbols(0, 0, cir = 0.2, inc = FALSE, add =
TRUE): partial argument match of 'cir' to 'circles'
dotcircle: warning in symbols(0, 0, cir = 0.2, inc = FALSE, add =
TRUE): partial argument match of 'inc' to 'inches'
dotcircle: warning in symbols(0, 0, cir = leg0[i], inc = FALSE, add =
TRUE, fg = grey(0.5)): partial argument match of 'cir' to 'circles'
dotcircle: warning in symbols(0, 0, cir = leg0[i], inc = FALSE, add =
TRUE, fg = grey(0.5)): partial argument match of 'inc' to 'inches'
dotcircle: warning in s.label(cbind.data.frame(c(0.2, 0, -0.2, 0), c(0,
-0.2, 0, 0.2)), lab = as.character(rep(leg[1], 4)), add.p = TRUE,
clab = cleg): partial argument match of 'lab' to 'label'
dotcircle: warning in s.label(cbind.data.frame(c(0.2, 0, -0.2, 0), c(0,
-0.2, 0, 0.2)), lab = as.character(rep(leg[1], 4)), add.p = TRUE,
clab = cleg): partial argument match of 'clab' to 'clabel'
dotcircle: warning in s.label(cbind.data.frame(c(0.2, 0, -0.2, 0), c(0,
-0.2, 0, 0.2)), lab = as.character(rep(leg[1], 4)), add.p = TRUE,
clab = cleg): partial argument match of 'add.p' to 'add.plot'
dotcircle: warning in s.label(cbind.data.frame(c(1, 0, -1, 0), c(0, -1,
0, 1)), lab = as.character(rep(leg[2], 4)), clab = cleg, add.p =
TRUE): partial argument match of 'lab' to 'label'
dotcircle: warning in s.label(cbind.data.frame(c(1, 0, -1, 0), c(0, -1,
0, 1)), lab = as.character(rep(leg[2], 4)), clab = cleg, add.p =
TRUE): partial argument match of 'clab' to 'clabel'
dotcircle: warning in s.label(cbind.data.frame(c(1, 0, -1, 0), c(0, -1,
0, 1)), lab = as.character(rep(leg[2], 4)), clab = cleg, add.p =
TRUE): partial argument match of 'add.p' to 'add.plot'
dudi.hillsmith: warning in scalewt(df[, j], w = row.w): partial
argument match of 'w' to 'wt'
enum.phylog : perm: warning in matrix(unlist(apply(a, 1, fun1)), ncol =
n0 + 1, byr = TRUE): partial argument match of 'byr' to 'byrow'
enum.phylog : permtot: warning in matrix(unlist(apply(matcar, 1, f1)),
n1 * n2, p1 + p2, byr = TRUE): partial argument match of 'byr' to
'byrow'
gearymoran: warning in matrix(res$result, ncol = nvar, byr = TRUE):
partial argument match of 'byr' to 'byrow'
is.euclid: warning in eigen(delta, symmetric = TRUE, only = TRUE):
partial argument match of 'only' to 'only.values'
kdisteuclid : lingo.1: warning in eigen(delta, sym = TRUE): partial
argument match of 'sym' to 'symmetric'
kdisteuclid : quasi.1: warning in eigen(delta, sym = TRUE): partial
argument match of 'sym' to 'symmetric'
kdisteuclid : cailliez.1: warning in eigen(m1, only = TRUE): partial
argument match of 'only' to 'only.values'
kplot.foucart: warning in s.label(cootot, clab = 0, cpoi = 0, sub =
object$tab.names[ianal], csub = csub, possub = possub): partial
argument match of 'clab' to 'clabel'
kplot.foucart: warning in s.label(cootot, clab = 0, cpoi = 0, sub =
object$tab.names[ianal], csub = csub, possub = possub): partial
argument match of 'cpoi' to 'cpoint'
kplot.foucart: warning in s.label(coolig, clab = clab.r, cpoi = cpoi,
add.p = TRUE): partial argument match of 'clab' to 'clabel'
kplot.foucart: warning in s.label(coolig, clab = clab.r, cpoi = cpoi,
add.p = TRUE): partial argument match of 'cpoi' to 'cpoint'
kplot.foucart: warning in s.label(coolig, clab = clab.r, cpoi = cpoi,
add.p = TRUE): partial argument match of 'add.p' to 'add.plot'
kplot.foucart: warning in s.label(coocol, clab = clab.c, add.p = TRUE):
partial argument match of 'clab' to 'clabel'
kplot.foucart: warning in s.label(coocol, clab = clab.c, add.p = TRUE):
partial argument match of 'add.p' to 'add.plot'
kplot.mcoa: warning in s.label(coo1, clab = clab, sub = "Reference",
possub = "bottomright", csub = csub): partial argument match of
'clab' to 'clabel'
kplot.mcoa: warning in s.match(coo1, coo2, clab = 0, add.p = TRUE):
partial argument match of 'clab' to 'clabel'
kplot.mcoa: warning in s.match(coo1, coo2, clab = 0, add.p = TRUE):
partial argument match of 'add.p' to 'add.plot'
kplot.mcoa: warning in s.label(coo1, clab = 0, cpoi = cpoint, add.p =
TRUE): partial argument match of 'clab' to 'clabel'
kplot.mcoa: warning in s.label(coo1, clab = 0, cpoi = cpoint, add.p =
TRUE): partial argument match of 'cpoi' to 'cpoint'
kplot.mcoa: warning in s.label(coo1, clab = 0, cpoi = cpoint, add.p =
TRUE): partial argument match of 'add.p' to 'add.plot'
kplot.mcoa: warning in s.corcircle(coo2, clab = clab, sub =
row.names(object$cov2)[ianal], csub = csub, possub = possub): partial
argument match of 'clab' to 'clabel'
kplot.mcoa: warning in s.arrow(coo2, clab = clab, sub =
row.names(object$cov2)[ianal], csub = csub, possub = possub): partial
argument match of 'clab' to 'clabel'
kplot.mfa: warning in s.label(coolig, clab = cl, cpoi = cpoi): partial
argument match of 'clab' to 'clabel'
kplot.mfa: warning in s.label(coolig, clab = cl, cpoi = cpoi): partial
argument match of 'cpoi' to 'cpoint'
kplot.mfa: warning in s.traject(coolig, clab = 0, add.p = TRUE):
partial argument match of 'clab' to 'clabel'
kplot.mfa: warning in s.traject(coolig, clab = 0, add.p = TRUE):
partial argument match of 'add.p' to 'add.plot'
kplot.mfa: warning in s.arrow(coocol, clab = clab * col.names, add.p =
TRUE, sub = object$tab.names[ianal], possub = possub, csub = csub):
partial argument match of 'clab' to 'clabel'
kplot.mfa: warning in s.arrow(coocol, clab = clab * col.names, add.p =
TRUE, sub = object$tab.names[ianal], possub = possub, csub = csub):
partial argument match of 'add.p' to 'add.plot'
kplot.pta: warning in s.corcircle(coo2, clab = clab, cgrid = 0, sub =
row.names(object$RV)[ianal], csub = csub, possub = possub): partial
argument match of 'clab' to 'clabel'
kplot.pta: warning in s.label(coo2, add.p = TRUE, clab = clab, label =
row.names(object$Tli)[object$TL[, 1] == ianal]): partial argument
match of 'clab' to 'clabel'
kplot.pta: warning in s.label(coo2, add.p = TRUE, clab = clab, label =
row.names(object$Tli)[object$TL[, 1] == ianal]): partial argument
match of 'add.p' to 'add.plot'
kplot.pta: warning in s.arrow(coo2, add.p = TRUE, clab = clab, sub =
row.names(object$RV)[ianal], csub = csub, possub = possub): partial
argument match of 'clab' to 'clabel'
kplot.pta: warning in s.arrow(coo2, add.p = TRUE, clab = clab, sub =
row.names(object$RV)[ianal], csub = csub, possub = possub): partial
argument match of 'add.p' to 'add.plot'
kplot.sepan: warning in s.label(coolig, clab = clab.row, cpoi = cpoi):
partial argument match of 'clab' to 'clabel'
kplot.sepan: warning in s.label(coolig, clab = clab.row, cpoi = cpoi):
partial argument match of 'cpoi' to 'cpoint'
kplot.sepan: warning in s.traject(coolig, clab = 0, cpoi = 2): partial
argument match of 'clab' to 'clabel'
kplot.sepan: warning in s.traject(coolig, clab = 0, cpoi = 2): partial
argument match of 'cpoi' to 'cpoint'
kplot.sepan: warning in s.arrow(coocol, clab = clab.col, add.p = TRUE,
sub = object$tab.names[ianal], csub = csub, possub = possub): partial
argument match of 'clab' to 'clabel'
kplot.sepan: warning in s.arrow(coocol, clab = clab.col, add.p = TRUE,
sub = object$tab.names[ianal], csub = csub, possub = possub): partial
argument match of 'add.p' to 'add.plot'
kplot.sepan.coa: warning in s.label(coocol, clab = 0, cpoi = 0, sub =
object$tab.names[ianal], csub = csub, possub = possub): partial
argument match of 'clab' to 'clabel'
kplot.sepan.coa: warning in s.label(coocol, clab = 0, cpoi = 0, sub =
object$tab.names[ianal], csub = csub, possub = possub): partial
argument match of 'cpoi' to 'cpoint'
kplot.sepan.coa: warning in s.label(coocol, clab = clab.col, cpoi =
cpoi, add.p = TRUE): partial argument match of 'clab' to 'clabel'
kplot.sepan.coa: warning in s.label(coocol, clab = clab.col, cpoi =
cpoi, add.p = TRUE): partial argument match of 'cpoi' to 'cpoint'
kplot.sepan.coa: warning in s.label(coocol, clab = clab.col, cpoi =
cpoi, add.p = TRUE): partial argument match of 'add.p' to 'add.plot'
kplot.sepan.coa: warning in s.label(coolig, clab = clab.row, add.p =
TRUE): partial argument match of 'clab' to 'clabel'
kplot.sepan.coa: warning in s.label(coolig, clab = clab.row, add.p =
TRUE): partial argument match of 'add.p' to 'add.plot'
kplot.statis: warning in s.label(cootot, clab = 0, cpoi = 0, sub =
object$tab.names[ianal], possub = possub, csub = csub): partial
argument match of 'clab' to 'clabel'
kplot.statis: warning in s.label(cootot, clab = 0, cpoi = 0, sub =
object$tab.names[ianal], possub = possub, csub = csub): partial
argument match of 'cpoi' to 'cpoint'
kplot.statis: warning in s.label(coocol, clab = 0, cpoi = 0, sub =
object$tab.names[ianal], possub = possub, csub = csub): partial
argument match of 'clab' to 'clabel'
kplot.statis: warning in s.label(coocol, clab = 0, cpoi = 0, sub =
object$tab.names[ianal], possub = possub, csub = csub): partial
argument match of 'cpoi' to 'cpoint'
kplot.statis: warning in s.arrow(coocol, clab = clab, add.p = TRUE):
partial argument match of 'clab' to 'clabel'
kplot.statis: warning in s.arrow(coocol, clab = clab, add.p = TRUE):
partial argument match of 'add.p' to 'add.plot'
kplot.statis: warning in s.label(coocol, clab = clab, cpoi = cpoi,
add.p = TRUE): partial argument match of 'clab' to 'clabel'
kplot.statis: warning in s.label(coocol, clab = clab, cpoi = cpoi,
add.p = TRUE): partial argument match of 'cpoi' to 'cpoint'
kplot.statis: warning in s.label(coocol, clab = clab, cpoi = cpoi,
add.p = TRUE): partial argument match of 'add.p' to 'add.plot'
kplot.statis: warning in s.traject(coocol, clab = 0, add.p = TRUE):
partial argument match of 'clab' to 'clabel'
kplot.statis: warning in s.traject(coocol, clab = 0, add.p = TRUE):
partial argument match of 'add.p' to 'add.plot'
kplot.statis: warning in s.class(coocol, f1, clab = clab, cpoi = 2, pch
= 20, axese = FALSE, cell = 0, add.plot = TRUE): partial argument
match of 'cell' to 'cellipse'
kplot.statis: warning in s.class(coocol, f1, clab = clab, cpoi = 2, pch
= 20, axese = FALSE, cell = 0, add.plot = TRUE): partial argument
match of 'axese' to 'axesell'
kplot.statis: warning in s.class(coocol, f1, clab = clab, cpoi = 2, pch
= 20, axese = FALSE, cell = 0, add.plot = TRUE): partial argument
match of 'clab' to 'clabel'
kplot.statis: warning in s.class(coocol, f1, clab = clab, cpoi = 2, pch
= 20, axese = FALSE, cell = 0, add.plot = TRUE): partial argument
match of 'cpoi' to 'cpoint'
kplotX.mdpcoa: warning in s.label(cootot, clab = 0, cpoi = 0, sub =
namloci[ianal], possub = possub, csub = csub): partial argument match
of 'clab' to 'clabel'
kplotX.mdpcoa: warning in s.label(cootot, clab = 0, cpoi = 0, sub =
namloci[ianal], possub = possub, csub = csub): partial argument match
of 'cpoi' to 'cpoint'
kplotX.mdpcoa: warning in s.label(coocol, clab = 0, cpoi = 0, sub =
namloci[ianal], possub = possub, csub = csub): partial argument match
of 'clab' to 'clabel'
kplotX.mdpcoa: warning in s.label(coocol, clab = 0, cpoi = 0, sub =
namloci[ianal], possub = possub, csub = csub): partial argument match
of 'cpoi' to 'cpoint'
kplotX.mdpcoa: warning in s.label(coocol, clab = ifelse(includepop, 0,
clab), cpoi = cpoi, add.p = TRUE): partial argument match of 'clab'
to 'clabel'
kplotX.mdpcoa: warning in s.label(coocol, clab = ifelse(includepop, 0,
clab), cpoi = cpoi, add.p = TRUE): partial argument match of 'cpoi'
to 'cpoint'
kplotX.mdpcoa: warning in s.label(coocol, clab = ifelse(includepop, 0,
clab), cpoi = cpoi, add.p = TRUE): partial argument match of 'add.p'
to 'add.plot'
kplotX.mdpcoa: warning in s.label(object$Tl1[object$TL[, 1] == ianal,
c(xax, yax)], clab = clab, cpoi = 0, add.plot = TRUE): partial
argument match of 'clab' to 'clabel'
kplotX.mdpcoa: warning in s.label(object$Tl1[object$TL[, 1] == ianal,
c(xax, yax)], clab = clab, cpoi = 0, add.plot = TRUE): partial
argument match of 'cpoi' to 'cpoint'
kplotX.mdpcoa: warning in s.label(object$cosupY[(1:npop) + npop *
(ianal - 1), c(xax, yax)], clab = clab, cpoi = 0, add.plot = TRUE):
partial argument match of 'clab' to 'clabel'
kplotX.mdpcoa: warning in s.label(object$cosupY[(1:npop) + npop *
(ianal - 1), c(xax, yax)], clab = clab, cpoi = 0, add.plot = TRUE):
partial argument match of 'cpoi' to 'cpoint'
kplotX.mdpcoa: warning in s.label(object$lisup[(1:npop) + npop * (ianal
- 1), c(xax, yax)], clab = clab, cpoi = 0, add.plot = TRUE): partial
argument match of 'clab' to 'clabel'
kplotX.mdpcoa: warning in s.label(object$lisup[(1:npop) + npop * (ianal
- 1), c(xax, yax)], clab = clab, cpoi = 0, add.plot = TRUE): partial
argument match of 'cpoi' to 'cpoint'
lingoes: warning in eigen(delta, sym = TRUE): partial argument match of
'sym' to 'symmetric'
lingoes: warning in round(abs(lder), dig = 6): partial argument match
of 'dig' to 'digits'
mdpcoa: warning in dpcoa(msamples[[i]], mdistances[[i]], scan =
scansep, full = full, nf = nf1, tol = tol): partial argument match of
'scan' to 'scannf'
mdpcoa: warning in mcoa(YesY, option[1], scan = scannf, nf = nf):
partial argument match of 'scan' to 'scannf'
mdpcoa: warning in statis(YesY, scan = scannf, nf = nf): partial
argument match of 'scan' to 'scannf'
mdpcoa: warning in mfa(YesY, option[1], scan = scannf, nf = nf):
partial argument match of 'scan' to 'scannf'
multispati: warning in eigen(covar, sym = TRUE): partial argument match
of 'sym' to 'symmetric'
newick2phylog.addtools: warning in eigen(w, sym = TRUE): partial
argument match of 'sym' to 'symmetric'
niche.param : calcul.param: warning in round(w[2:4]/w[1], dig = 3):
partial argument match of 'dig' to 'digits'
orthobasis.listw: warning in eigen(b0, sym = TRUE): partial argument
match of 'sym' to 'symmetric'
orthobasis.mat: warning in eigen(mat, sym = TRUE): partial argument
match of 'sym' to 'symmetric'
orthobasis.neig: warning in eigen(d0, sym = TRUE): partial argument
match of 'sym' to 'symmetric'
orthogram : orthoneig: warning in eigen(b0, sym = TRUE): partial
argument match of 'sym' to 'symmetric'
orthogram: warning in arrows(mp[x0], sig50[x0], mp[x0], phylocum[x0],
ang = 15, le = 0.15, lwd = 2): partial argument match of 'le' to
'length'
orthogram: warning in arrows(mp[x0], sig50[x0], mp[x0], phylocum[x0],
ang = 15, le = 0.15, lwd = 2): partial argument match of 'ang' to
'angle'
pcaiv: warning in signif(dudi$eig[1:X$nf], dig = 3): partial argument
match of 'dig' to 'digits'
pcaiv: warning in signif(cumsum(dudi$eig[1:X$nf]), dig = 3): partial
argument match of 'dig' to 'digits'
pcaiv: warning in signif(varpro, dig = 3): partial argument match of
'dig' to 'digits'
pcaiv: warning in signif(cumsum(varpro), dig = 3): partial argument
match of 'dig' to 'digits'
pcaiv: warning in signif(cumsum(varpro)/cumsum(dudi$eig[1:X$nf]), dig =
3): partial argument match of 'dig' to 'digits'
pcaiv: warning in signif(X$eig[1:X$nf]/varpro, dig = 3): partial
argument match of 'dig' to 'digits'
pcaiv: warning in signif(X$eig[1:X$nf], dig = 3): partial argument
match of 'dig' to 'digits'
pcaivortho: warning in signif(dudi$eig[1:X$nf], dig = 3): partial
argument match of 'dig' to 'digits'
pcaivortho: warning in signif(cumsum(dudi$eig[1:X$nf]), dig = 3):
partial argument match of 'dig' to 'digits'
pcaivortho: warning in signif(varpro, dig = 3): partial argument match
of 'dig' to 'digits'
pcaivortho: warning in signif(cumsum(varpro), dig = 3): partial
argument match of 'dig' to 'digits'
pcaivortho: warning in signif(cumsum(varpro)/cumsum(dudi$eig[1:X$nf]),
dig = 3): partial argument match of 'dig' to 'digits'
pcaivortho: warning in signif(X$eig[1:X$nf]/varpro, dig = 3): partial
argument match of 'dig' to 'digits'
pcaivortho: warning in signif(X$eig[1:X$nf], dig = 3): partial argument
match of 'dig' to 'digits'
plot.betcoi: warning in s.arrow(x$aX, xax, yax, sub = "X axes", csub =
2, clab = 1.25): partial argument match of 'clab' to 'clabel'
plot.betcoi: warning in s.arrow(x$aY, xax, yax, sub = "Y axes", csub =
2, clab = 1.25): partial argument match of 'clab' to 'clabel'
plot.betcoi: warning in s.match.class(df1xy = x$msX, df2xy = x$msY, fac
= fac, clab = 1.5): partial argument match of 'clab' to 'clabel'
plot.betcoi: warning in s.arrow(x$l1, xax = xax, yax = yax, sub = "Y
Canonical weights", csub = 2, clab = 1.25): partial argument match of
'clab' to 'clabel'
plot.betcoi: warning in s.arrow(x$c1, xax = xax, yax = yax, sub = "X
Canonical weights", csub = 2, clab = 1.25): partial argument match of
'clab' to 'clabel'
plot.between: warning in s.arrow(bet$c1, xax = xax, yax = yax, sub =
"Canonical weights", csub = 2, clab = 1.25): partial argument match
of 'clab' to 'clabel'
plot.between: warning in s.arrow(bet$co, xax = xax, yax = yax, sub =
"Variables", csub = 2, cgrid = 0, clab = 1.25): partial argument
match of 'clab' to 'clabel'
plot.between: warning in s.class(bet$ls, fac, xax = xax, yax = yax, sub
= "Scores and classes", csub = 2, clab = 1.25): partial argument
match of 'clab' to 'clabel'
plot.between: warning in s.corcircle(bet$as, xax = xax, yax = yax, sub
= "Inertia axes", csub = 2, cgrid = 0, clab = 1.25): partial argument
match of 'clab' to 'clabel'
plot.between: warning in s.label(bet$li, xax = xax, yax = yax, sub =
"Classes", csub = 2, clab = 1.25): partial argument match of 'clab'
to 'clabel'
plot.coinertia: warning in s.corcircle(x$aX, xax, yax, sub = "X axes",
csub = 2, clab = 1.25): partial argument match of 'clab' to 'clabel'
plot.coinertia: warning in s.corcircle(x$aY, xax, yax, sub = "Y axes",
csub = 2, clab = 1.25): partial argument match of 'clab' to 'clabel'
plot.coinertia: warning in s.match(x$mX, x$mY, xax, yax, clab = 1.5):
partial argument match of 'clab' to 'clabel'
plot.coinertia: warning in s.arrow(x$l1, xax = xax, yax = yax, sub = "Y
Canonical weights", csub = 2, clab = 1.25): partial argument match of
'clab' to 'clabel'
plot.coinertia: warning in s.arrow(x$c1, xax = xax, yax = yax, sub = "X
Canonical weights", csub = 2, clab = 1.25): partial argument match of
'clab' to 'clabel'
plot.discrimin: warning in s.arrow(x$fa, xax = xax, yax = yax, sub =
"Canonical weights", csub = 2, clab = 1.25): partial argument match
of 'clab' to 'clabel'
plot.discrimin: warning in s.corcircle(x$va, xax = xax, yax = yax, sub
= "Cos(variates,canonical variates)", csub = 2, cgrid = 0, clab =
1.25): partial argument match of 'clab' to 'clabel'
plot.discrimin: warning in s.class(x$li, fac, xax = xax, yax = yax, sub
= "Scores and classes", csub = 2, clab = 1.5): partial argument match
of 'clab' to 'clabel'
plot.discrimin: warning in s.corcircle(x$cp, xax = xax, yax = yax, sub
= "Cos(components,canonical variates)", csub = 2, cgrid = 0, clab =
1.25): partial argument match of 'clab' to 'clabel'
plot.discrimin: warning in s.label(x$gc, xax = xax, yax = yax, sub =
"Class scores", csub = 2, clab = 1.25): partial argument match of
'clab' to 'clabel'
plot.dpcoa: warning in s.corcircle(x$c1[, c(xax, yax)], cgrid = 0, sub
= "Base", csub = 1.5, possub = "topleft", full = TRUE): partial
argument match of 'full' to 'fullcircle'
plot.dpcoa: warning in s.label(x$l1[, c(xax, yax)], clab = 0, cpoi =
2): partial argument match of 'clab' to 'clabel'
plot.dpcoa: warning in s.label(x$l1[, c(xax, yax)], clab = 0, cpoi =
2): partial argument match of 'cpoi' to 'cpoint'
plot.dpcoa: warning in s.distri(x$l1[, c(xax, yax)], X, add.plot =
TRUE, cell = 1, cstar = 0, axesell = 0, lab = names(X), cpo = 0, clab
= 1): partial argument match of 'cell' to 'cellipse'
plot.dpcoa: warning in s.distri(x$l1[, c(xax, yax)], X, add.plot =
TRUE, cell = 1, cstar = 0, axesell = 0, lab = names(X), cpo = 0, clab
= 1): partial argument match of 'lab' to 'label'
plot.dpcoa: warning in s.distri(x$l1[, c(xax, yax)], X, add.plot =
TRUE, cell = 1, cstar = 0, axesell = 0, lab = names(X), cpo = 0, clab
= 1): partial argument match of 'clab' to 'clabel'
plot.dpcoa: warning in s.distri(x$l1[, c(xax, yax)], X, add.plot =
TRUE, cell = 1, cstar = 0, axesell = 0, lab = names(X), cpo = 0, clab
= 1): partial argument match of 'cpo' to 'cpoint'
plot.dpcoa: warning in s.label(x$l2[, c(xax, yax)], clab = 1, cpoi =
0): partial argument match of 'clab' to 'clabel'
plot.dpcoa: warning in s.label(x$l2[, c(xax, yax)], clab = 1, cpoi =
0): partial argument match of 'cpoi' to 'cpoint'
plot.dpcoa: warning in s.value(x$l2[, c(xax, yax)], x$RaoDiv, csi =
csize, sub = "Rao Divcs", possub = "topright", csub = 1.5): partial
argument match of 'csi' to 'csize'
plot.foucart: warning in s.label(cootot, clab = 0, cpoi = 0, sub =
"Rows (Base)", csub = csub, possub = possub): partial argument match
of 'clab' to 'clabel'
plot.foucart: warning in s.label(cootot, clab = 0, cpoi = 0, sub =
"Rows (Base)", csub = csub, possub = possub): partial argument match
of 'cpoi' to 'cpoint'
plot.foucart: warning in s.label(x$li, xax, yax, clab = clab, add.p =
TRUE): partial argument match of 'clab' to 'clabel'
plot.foucart: warning in s.label(x$li, xax, yax, clab = clab, add.p =
TRUE): partial argument match of 'add.p' to 'add.plot'
plot.foucart: warning in s.label(cootot, clab = 0, cpoi = 0, sub =
"Columns (Base)", csub = csub, possub = possub): partial argument
match of 'clab' to 'clabel'
plot.foucart: warning in s.label(cootot, clab = 0, cpoi = 0, sub =
"Columns (Base)", csub = csub, possub = possub): partial argument
match of 'cpoi' to 'cpoint'
plot.foucart: warning in s.label(x$co, xax, yax, clab = clab, add.p =
TRUE): partial argument match of 'clab' to 'clabel'
plot.foucart: warning in s.label(x$co, xax, yax, clab = clab, add.p =
TRUE): partial argument match of 'add.p' to 'add.plot'
plot.foucart: warning in s.label(cootot, clab = 0, cpoi = 0, sub =
"Rows", csub = csub, possub = possub): partial argument match of
'clab' to 'clabel'
plot.foucart: warning in s.label(cootot, clab = 0, cpoi = 0, sub =
"Rows", csub = csub, possub = possub): partial argument match of
'cpoi' to 'cpoint'
plot.foucart: warning in s.class(x$Tli, x$TL[, 2], xax = xax, yax =
yax, axesell = FALSE, clab = clab, add.p = TRUE): partial argument
match of 'clab' to 'clabel'
plot.foucart: warning in s.class(x$Tli, x$TL[, 2], xax = xax, yax =
yax, axesell = FALSE, clab = clab, add.p = TRUE): partial argument
match of 'add.p' to 'add.plot'
plot.foucart: warning in s.label(cootot, clab = 0, cpoi = 0, sub =
"Columns", csub = csub, possub = possub): partial argument match of
'clab' to 'clabel'
plot.foucart: warning in s.label(cootot, clab = 0, cpoi = 0, sub =
"Columns", csub = csub, possub = possub): partial argument match of
'cpoi' to 'cpoint'
plot.foucart: warning in s.class(x$Tco, x$TC[, 2], xax = xax, yax =
yax, axesell = FALSE, clab = clab, add.p = TRUE): partial argument
match of 'clab' to 'clabel'
plot.foucart: warning in s.class(x$Tco, x$TC[, 2], xax = xax, yax =
yax, axesell = FALSE, clab = clab, add.p = TRUE): partial argument
match of 'add.p' to 'add.plot'
plot.mcoa: warning in s.match(x$Tl1[, c(xax, yax)], coolig, clab = 0,
sub = "Row projection", csub = 1.5, edge = FALSE): partial argument
match of 'clab' to 'clabel'
plot.mcoa: warning in s.corcircle(x$Tax[x$T4[, 2] == 1, ], full =
FALSE, sub = "First axis projection", possub = "topright", csub =
1.5): partial argument match of 'full' to 'fullcircle'
plot.mfa: warning in s.class(coolig, fac = as.factor(x$TL[, 2]), label
= row.names(x$li), cell = 0, sub = "Row projection", csub = 1.5):
partial argument match of 'cell' to 'cellipse'
plot.mfa: warning in s.corcircle(x$T4comp[x$T4[, 2] == 1, ], full =
FALSE, sub = "Component projection", possub = "topright", csub =
1.5): partial argument match of 'full' to 'fullcircle'
plot.multispati: warning in s.arrow(x$c1, xax = xax, yax = yax, sub =
"Canonical weights", csub = 2, clab = 1.25): partial argument match
of 'clab' to 'clabel'
plot.multispati: warning in s.match(x$li, x$ls, xax = xax, yax = yax,
sub = "Scores and lag scores", csub = 2, clab = 0.75): partial
argument match of 'clab' to 'clabel'
plot.niche: warning in s.corcircle(x$as, xax, yax, sub = "Axis", csub =
2, clab = 1.25): partial argument match of 'clab' to 'clabel'
plot.niche: warning in s.arrow(x$c1, xax, yax, sub = "Variables", csub
= 2, clab = 1.25): partial argument match of 'clab' to 'clabel'
plot.niche: warning in s.label(x$ls, xax, yax, clab = 0, cpo = 2, sub =
"Samples and Species", csub = 2): partial argument match of 'clab' to
'clabel'
plot.niche: warning in s.label(x$ls, xax, yax, clab = 0, cpo = 2, sub =
"Samples and Species", csub = 2): partial argument match of 'cpo' to
'cpoint'
plot.niche: warning in s.label(x$li, xax, yax, clab = 1.5, add.p =
TRUE): partial argument match of 'clab' to 'clabel'
plot.niche: warning in s.label(x$li, xax, yax, clab = 1.5, add.p =
TRUE): partial argument match of 'add.p' to 'add.plot'
plot.niche: warning in s.label(x$ls, xax, yax, clab = 1.25, sub =
"Samples", csub = 2): partial argument match of 'clab' to 'clabel'
plot.niche: warning in s.distri(x$ls, eval(as.list(x$call)[[3]],
sys.frame(0)), cstar = 0, axesell = FALSE, cell = 1, sub = "Niches",
csub = 2): partial argument match of 'cell' to 'cellipse'
plot.pcaiv: warning in s.arrow(na.omit(x$fa), xax, yax, sub =
"Loadings", csub = 2, clab = 1.25): partial argument match of 'clab'
to 'clabel'
plot.pcaiv: warning in s.arrow(na.omit(x$cor), xax = xax, yax = yax,
sub = "Correlation", csub = 2, clab = 1.25): partial argument match
of 'clab' to 'clabel'
plot.pcaiv: warning in s.match(x$li, x$ls, xax, yax, clab = 1.5, sub =
"Scores and predictions", csub = 2): partial argument match of 'clab'
to 'clabel'
plot.pcaiv: warning in s.label(x$co, xax, yax, clab = 0, cpoi = 3,
add.p = TRUE): partial argument match of 'clab' to 'clabel'
plot.pcaiv: warning in s.label(x$co, xax, yax, clab = 0, cpoi = 3,
add.p = TRUE): partial argument match of 'cpoi' to 'cpoint'
plot.pcaiv: warning in s.label(x$co, xax, yax, clab = 0, cpoi = 3,
add.p = TRUE): partial argument match of 'add.p' to 'add.plot'
plot.pcaiv: warning in s.label(x$co, xax, yax, clab = 1.25, sub =
"Species", csub = 2): partial argument match of 'clab' to 'clabel'
plot.pcaiv: warning in s.arrow(x$c1, xax = xax, yax = yax, sub =
"Variables", csub = 2, clab = 1.25): partial argument match of 'clab'
to 'clabel'
plot.procuste: warning in s.arrow(x$load1, xax, yax, sub = "Loadings
1", csub = 2, clab = 1.25): partial argument match of 'clab' to
'clabel'
plot.procuste: warning in s.arrow(x$load2, xax, yax, sub = "Loadings
2", csub = 2, clab = 1.25): partial argument match of 'clab' to
'clabel'
plot.procuste: warning in s.match(x$scor1, x$scor2, xax, yax, clab =
1.5, sub = "Common projection", csub = 2): partial argument match of
'clab' to 'clabel'
plot.procuste: warning in s.label(x$scor1, xax = xax, yax = yax, sub =
"Array 1", csub = 2, clab = 1.25): partial argument match of 'clab'
to 'clabel'
plot.procuste: warning in s.label(x$scor2, xax = xax, yax = yax, sub =
"Array 2", csub = 2, clab = 1.25): partial argument match of 'clab'
to 'clabel'
plot.pta: warning in s.corcircle(coolig, label = x$tab.names, cgrid =
0, sub = "Interstructure", csub = 1.5, possub = "topleft", full =
TRUE): partial argument match of 'full' to 'fullcircle'
plot.rlq: warning in s.label(x$lR[, c(xax, yax)], sub = "R row scores",
csub = 2, clab = 1.25): partial argument match of 'clab' to 'clabel'
plot.rlq: warning in s.label(x$lQ[, c(xax, yax)], sub = "Q row scores",
csub = 2, clab = 1.25): partial argument match of 'clab' to 'clabel'
plot.rlq: warning in s.corcircle(x$aR, xax, yax, sub = "R axes", csub =
2, clab = 1.25): partial argument match of 'clab' to 'clabel'
plot.rlq: warning in s.arrow(x$l1, xax = xax, yax = yax, sub = "R
Canonical weights", csub = 2, clab = 1.25): partial argument match of
'clab' to 'clabel'
plot.rlq: warning in s.corcircle(x$aQ, xax, yax, sub = "Q axes", csub =
2, clab = 1.25): partial argument match of 'clab' to 'clabel'
plot.rlq: warning in s.arrow(x$c1, xax = xax, yax = yax, sub = "Q
Canonical weights", csub = 2, clab = 1.25): partial argument match of
'clab' to 'clabel'
plot.statis: warning in s.corcircle(coolig, label = x$tab.names, cgrid
= 0, sub = "Interstructure", csub = 1.5, possub = "topleft", full =
TRUE): partial argument match of 'full' to 'fullcircle'
plot.statis: warning in s.corcircle(cooax, xax, yax, full = TRUE, sub =
"Component projection", possub = "topright", csub = 1.5): partial
argument match of 'full' to 'fullcircle'
plot.witcoi: warning in s.arrow(x$aX, xax, yax, sub = "X axes", csub =
2, clab = 1.25): partial argument match of 'clab' to 'clabel'
plot.witcoi: warning in s.arrow(x$aY, xax, yax, sub = "Y axes", csub =
2, clab = 1.25): partial argument match of 'clab' to 'clabel'
plot.witcoi: warning in s.match.class(df1xy = x$msX, df2xy = x$msY, fac
= fac, clab = 1.5): partial argument match of 'clab' to 'clabel'
plot.witcoi: warning in s.arrow(x$l1, xax = xax, yax = yax, sub = "Y
Canonical weights", csub = 2, clab = 1.25): partial argument match of
'clab' to 'clabel'
plot.witcoi: warning in s.arrow(x$c1, xax = xax, yax = yax, sub = "X
Canonical weights", csub = 2, clab = 1.25): partial argument match of
'clab' to 'clabel'
plot.within: warning in s.arrow(x$c1, xax = xax, yax = yax, sub =
"Canonical weights", csub = 2, clab = 1.25): partial argument match
of 'clab' to 'clabel'
plot.within: warning in s.arrow(x$co, xax = xax, yax = yax, sub =
"Variables", csub = 2, clab = 1.25): partial argument match of 'clab'
to 'clabel'
plot.within: warning in s.class(x$ls, fac, xax = xax, yax = yax, sub =
"Scores and classes", csub = 2, clab = 1.5, cpoi = 2): partial
argument match of 'clab' to 'clabel'
plot.within: warning in s.class(x$ls, fac, xax = xax, yax = yax, sub =
"Scores and classes", csub = 2, clab = 1.5, cpoi = 2): partial
argument match of 'cpoi' to 'cpoint'
plot.within: warning in s.corcircle(x$as, xax = xax, yax = yax, sub =
"Inertia axes", csub = 2, cgrid = 0, clab = 1.25): partial argument
match of 'clab' to 'clabel'
plot.within: warning in s.class(x$li, fac, xax = xax, yax = yax,
axesell = FALSE, clab = 0, cstar = 0, sub = "Common centring", csub =
2): partial argument match of 'clab' to 'clabel'
quasieuclid: warning in eigen(delta, sym = TRUE): partial argument
match of 'sym' to 'symmetric'
radial.phylog: warning in symbols(x1, y1, delta, bg = "white", add =
TRUE, inch = FALSE): partial argument match of 'inch' to 'inches'
s.arrow : arrow1: warning in arrows(x0, y0, x1, y1, ang = ang, len =
len, lty = 1): partial argument match of 'len' to 'length'
s.arrow : arrow1: warning in arrows(x0, y0, x1, y1, ang = ang, len =
len, lty = 1): partial argument match of 'ang' to 'angle'
s.corcircle : arrow1: warning in arrows(x0, y0, x1, y1, ang = ang, len
= len, lty = 1): partial argument match of 'len' to 'length'
s.corcircle : arrow1: warning in arrows(x0, y0, x1, y1, ang = ang, len
= len, lty = 1): partial argument match of 'ang' to 'angle'
s.hist: warning in round(a, dig = 3): partial argument match of 'dig'
to 'digits'
s.hist: warning in symbols(rep(0, length(leg)), rep(0, length(leg)),
circ = leg, lty = 2, inch = FALSE, add = TRUE): partial argument
match of 'circ' to 'circles'
s.hist: warning in symbols(rep(0, length(leg)), rep(0, length(leg)),
circ = leg, lty = 2, inch = FALSE, add = TRUE): partial argument
match of 'inch' to 'inches'
s.kde2d: warning in s.label(dfxy, xax = xax, yax = yax, clab = 0, pch =
pch, cpoint = cpoint, neig = neig, cneig = cneig, xlim = xlim, ylim =
ylim, grid = grid, addaxes = addaxes, cgrid = cgrid, include.origin =
include.origin, origin = origin, sub = sub, csub = csub, possub =
possub, pixmap = pixmap, contour = contour, area = area, add.plot =
add.plot): partial argument match of 'clab' to 'clabel'
s.match : arrow1: warning in arrows(x0, y0, x1, y1, ang = ang, len =
len, lty = 1): partial argument match of 'len' to 'length'
s.match : arrow1: warning in arrows(x0, y0, x1, y1, ang = ang, len =
len, lty = 1): partial argument match of 'ang' to 'angle'
s.multinom : util.ellipse: warning in eigen(covmat, sym = TRUE):
partial argument match of 'sym' to 'symmetric'
s.multinom: warning in s.label(dfxy, 1, 2, clab = 0, cpoi = cpointcat,
...): partial argument match of 'clab' to 'clabel'
s.multinom: warning in s.label(dfxy, 1, 2, clab = 0, cpoi = cpointcat,
...): partial argument match of 'cpoi' to 'cpoint'
s.multinom: warning in s.arrow(dfxy, add.p = TRUE, origin = -mgene,
clab = clabelcat, label = labelcat): partial argument match of 'clab'
to 'clabel'
s.multinom: warning in s.arrow(dfxy, add.p = TRUE, origin = -mgene,
clab = clabelcat, label = labelcat): partial argument match of
'add.p' to 'add.plot'
s.multinom: warning in s.chull(dfxy, add.p = TRUE, fac = factor(rep(1,
ncat)), opt = 1, clab = 0): partial argument match of 'opt' to
'optchull'
s.multinom: warning in s.chull(dfxy, add.p = TRUE, fac = factor(rep(1,
ncat)), opt = 1, clab = 0): partial argument match of 'clab' to
'clabel'
s.multinom: warning in s.chull(dfxy, add.p = TRUE, fac = factor(rep(1,
ncat)), opt = 1, clab = 0): partial argument match of 'add.p' to
'add.plot'
s.traject : arrow1: warning in arrows(x0, y0, x1, y1, ang = 15, len =
0.1, lty = 1): partial argument match of 'len' to 'length'
s.traject : arrow1: warning in arrows(x0, y0, x1, y1, ang = 15, len =
0.1, lty = 1): partial argument match of 'ang' to 'angle'
s.value: warning in cut.default(z, br0, include = TRUE, lab = FALSE):
partial argument match of 'lab' to 'labels'
s.value: warning in cut.default(z, br0, include = TRUE, lab = FALSE):
partial argument match of 'include' to 'include.lowest'
s.value: warning in symbols(coo$x[i], coo$y[i], squares = h, bg =
gray(valgris[numclass[i]]), add = TRUE, inch = FALSE): partial
argument match of 'inch' to 'inches'
s.value: warning in symbols(coo$x[i], coo$y[i], squares = sq[i], bg =
"black", fg = "white", add = TRUE, inch = FALSE): partial argument
match of 'inch' to 'inches'
s.value: warning in symbols(coo$x[i], coo$y[i], squares = sq[i], bg =
"white", fg = "black", add = TRUE, inch = FALSE): partial argument
match of 'inch' to 'inches'
scatter.acm: warning in s.class(x$li, oritab[, i], xax = xax, yax =
yax, clab = 1.5, sub = names(oritab)[i], csub = csub, possub =
possub, cgrid = 0, csta = 0, ...): partial argument match of 'csta'
to 'cstar'
scatter.acm: warning in s.class(x$li, oritab[, i], xax = xax, yax =
yax, clab = 1.5, sub = names(oritab)[i], csub = csub, possub =
possub, cgrid = 0, csta = 0, ...): partial argument match of 'clab'
to 'clabel'
scatter.coa: warning in s.label(rbind.data.frame(coolig, coocol), clab
= 0, cpoi = 0, sub = sub, csub = csub): partial argument match of
'clab' to 'clabel'
scatter.coa: warning in s.label(rbind.data.frame(coolig, coocol), clab
= 0, cpoi = 0, sub = sub, csub = csub): partial argument match of
'cpoi' to 'cpoint'
scatter.coa: warning in s.label(coolig, clab = clab.row, add.p = TRUE):
partial argument match of 'clab' to 'clabel'
scatter.coa: warning in s.label(coolig, clab = clab.row, add.p = TRUE):
partial argument match of 'add.p' to 'add.plot'
scatter.coa: warning in s.label(coocol, clab = clab.col, add.p = TRUE):
partial argument match of 'clab' to 'clabel'
scatter.coa: warning in s.label(coocol, clab = clab.col, add.p = TRUE):
partial argument match of 'add.p' to 'add.plot'
scatter.coa: warning in s.label(coocol, clab = clab.col, sub = sub,
csub = csub): partial argument match of 'clab' to 'clabel'
scatter.coa: warning in s.label(coolig, clab = clab.row, add.plot =
TRUE): partial argument match of 'clab' to 'clabel'
scatter.coa: warning in s.label(coolig, clab = clab.col, sub = sub,
csub = csub): partial argument match of 'clab' to 'clabel'
scatter.coa: warning in s.label(coocol, clab = clab.row, add.plot =
TRUE): partial argument match of 'clab' to 'clabel'
scatter.dudi: warning in s.label(coolig, clab = clab.row): partial
argument match of 'clab' to 'clabel'
scatter.dudi: warning in s.arrow(coocol, clab = clab.col, add.p = TRUE,
sub = sub, possub = "bottomright"): partial argument match of 'clab'
to 'clabel'
scatter.dudi: warning in s.arrow(coocol, clab = clab.col, add.p = TRUE,
sub = sub, possub = "bottomright"): partial argument match of 'add.p'
to 'add.plot'
scatter.fca: warning in s.distri(x$l1, oritab[, which(indica == j)],
clab = clab.moda, sub = as.character(j), cell = 0, csta = 0.5, csub =
csub, label = labels[which(indica == j)]): partial argument match of
'csta' to 'cstar'
scatter.fca: warning in s.distri(x$l1, oritab[, which(indica == j)],
clab = clab.moda, sub = as.character(j), cell = 0, csta = 0.5, csub =
csub, label = labels[which(indica == j)]): partial argument match of
'cell' to 'cellipse'
scatter.fca: warning in s.distri(x$l1, oritab[, which(indica == j)],
clab = clab.moda, sub = as.character(j), cell = 0, csta = 0.5, csub =
csub, label = labels[which(indica == j)]): partial argument match of
'clab' to 'clabel'
scatter.nipals: warning in s.label(coolig, clab = clab.row): partial
argument match of 'clab' to 'clabel'
scatter.nipals: warning in s.arrow(coocol, clab = clab.col, add.p =
TRUE, sub = sub, possub = "bottomright"): partial argument match of
'clab' to 'clabel'
scatter.nipals: warning in s.arrow(coocol, clab = clab.col, add.p =
TRUE, sub = sub, possub = "bottomright"): partial argument match of
'add.p' to 'add.plot'
scatter.pco: warning in s.label(coolig, clab = clab.row, sub = sub,
csub = csub): partial argument match of 'clab' to 'clabel'
scatterutil.legend.bw.square: warning in round(br0, dig = 6): partial
argument match of 'dig' to 'digits'
scatterutil.legend.bw.square: warning in symbols(x0, y0, squares = z0,
bg = "black", fg = "white", add = TRUE, inch = FALSE): partial
argument match of 'inch' to 'inches'
scatterutil.legend.bw.square: warning in symbols(x0, y0, squares = z0,
bg = "white", fg = "black", add = TRUE, inch = FALSE): partial
argument match of 'inch' to 'inches'
scatterutil.legend.square.grey: warning in round(br0, dig = 6): partial
argument match of 'dig' to 'digits'
scatterutil.legend.square.grey: warning in symbols(x0, y0, squares = h,
bg = gray(valgris[i - 1]), add = TRUE, inch = FALSE): partial
argument match of 'inch' to 'inches'
scatterutil.legend.square.grey: warning in round(cha, dig = 3): partial
argument match of 'dig' to 'digits'
scatterutil.legendgris: warning in signif(qq, dig = 2): partial
argument match of 'dig' to 'digits'
sco.quant: warning in s.class(cbind.data.frame(score, df[, i]), fac,
axesell = FALSE, add.plot = TRUE, clab = clabel): partial argument
match of 'clab' to 'clabel'
score.acm: warning in scatterutil.eti(moy, moy, label =
as.character(levels(y)), clab = 1.5): partial argument match of
'clab' to 'clabel'
score.mix: warning in scatterutil.eti(moy, moy, label =
as.character(levels(y)), clab = 1): partial argument match of 'clab'
to 'clabel'
scores.neig: warning in eigen(b0, sym = TRUE): partial argument match
of 'sym' to 'symmetric'
statis: warning in eigen(RV, sym = TRUE): partial argument match of
'sym' to 'symmetric'
statis: warning in eigen(C.ro, sym = TRUE): partial argument match of
'sym' to 'symmetric'
summary.corkdist: warning in round(unlist(lapply(object, function(x)
x$pvalue)), dig = ndig0): partial argument match of 'dig' to 'digits'
summary.mcoa: warning in round(eigval, dig = 3): partial argument match
of 'dig' to 'digits'
summary.mcoa: warning in round(eigvalplus, dig = 3): partial argument
match of 'dig' to 'digits'
summary.mcoa: warning in round(varproj, dig = 3): partial argument
match of 'dig' to 'digits'
summary.mcoa: warning in round(varprojplus, dig = 3): partial argument
match of 'dig' to 'digits'
summary.mcoa: warning in round(cos2, dig = 3): partial argument match
of 'dig' to 'digits'
summary.mcoa: warning in round(object$cov2[i, ], dig = 3): partial
argument match of 'dig' to 'digits'
summary.sepan: warning in zapsmall(object$Eig[indica == k], dig = 4):
partial argument match of 'dig' to 'digits'
summary.sepan: warning in round(eig[1:l0], dig = 3): partial argument
match of 'dig' to 'digits'
summary.witwit: warning in round(aa, dig = 4): partial argument match
of 'dig' to 'digits'
summary.witwit: warning in round(object$lbw, dig = 4): partial argument
match of 'dig' to 'digits'
summary.witwit: warning in round(object$eig[1:nf], dig = 4): partial
argument match of 'dig' to 'digits'
summary.witwit: warning in round(aa, dig = 0): partial argument match
of 'dig' to 'digits'
summary.witwit: warning in round(object$cbw, dig = 4): partial argument
match of 'dig' to 'digits'
symbols.phylog : legender: warning in round(br0, dig = 6): partial
argument match of 'dig' to 'digits'
symbols.phylog : legender: warning in symbols(x0, y0, squares = z0, bg
= "black", fg = "white", add = TRUE, inch = FALSE): partial argument
match of 'inch' to 'inches'
symbols.phylog : legender: warning in symbols(x0, y0, circles = z0/2,
bg = "black", fg = "white", add = TRUE, inch = FALSE): partial
argument match of 'inch' to 'inches'
symbols.phylog : legender: warning in symbols(x0, y0, squares = z0, bg
= "white", fg = "black", add = TRUE, inch = FALSE): partial argument
match of 'inch' to 'inches'
symbols.phylog : legender: warning in symbols(x0, y0, circles = z0/2,
bg = "white", fg = "black", add = TRUE, inch = FALSE): partial
argument match of 'inch' to 'inches'
symbols.phylog: warning in symbols(yinit[i], xinit[i], squares = sq[i],
bg = "black", fg = "white", add = TRUE, inch = FALSE): partial
argument match of 'inch' to 'inches'
symbols.phylog: warning in symbols(yinit[i], xinit[i], squares = sq[i],
bg = "white", fg = "black", add = TRUE, inch = FALSE): partial
argument match of 'inch' to 'inches'
symbols.phylog: warning in symbols(yinit[i], xinit[i], circles =
sq[i]/2, bg = "black", fg = "white", add = TRUE, inch = FALSE):
partial argument match of 'inch' to 'inches'
symbols.phylog: warning in symbols(yinit[i], xinit[i], circles =
sq[i]/2, bg = "white", fg = "black", add = TRUE, inch = FALSE):
partial argument match of 'inch' to 'inches'
table.cont: warning in symbols(xtot[i], ytot[i], squares = sq[i], bg =
"white", fg = 1, add = TRUE, inch = FALSE): partial argument match of
'inch' to 'inches'
table.cont: warning in lm(y ~ x, wei = df): partial argument match of
'wei' to 'weights'
table.cont: warning in lm(x ~ y, wei = df): partial argument match of
'wei' to 'weights'
table.dist: warning in symbols(xtot, ytot, circles = sq, fg = 1, bg =
grey(0.8), add = TRUE, inch = FALSE): partial argument match of
'inch' to 'inches'
table.paint: warning in cut.default(z, br0, include = TRUE, lab =
FALSE): partial argument match of 'lab' to 'labels'
table.paint: warning in cut.default(z, br0, include = TRUE, lab =
FALSE): partial argument match of 'include' to 'include.lowest'
table.phylog: warning in strwidth(labels.row, unit = "inches", cex =
cexrow): partial argument match of 'unit' to 'units'
table.phylog: warning in strwidth(labels.col, unit = "inches", cex =
cexcol): partial argument match of 'unit' to 'units'
table.phylog: warning in symbols(xtot[i], ytot[i], squares = sq[i], bg
= "black", fg = "white", add = TRUE, inch = FALSE): partial argument
match of 'inch' to 'inches'
table.phylog: warning in symbols(xtot[i], ytot[i], squares = sq[i], bg
= "white", fg = "black", add = TRUE, inch = FALSE): partial argument
match of 'inch' to 'inches'
table.value: warning in symbols(xtot[i], ytot[i], squares = sq[i], bg =
1, fg = 0, add = TRUE, inch = FALSE): partial argument match of
'inch' to 'inches'
table.value: warning in symbols(xtot[i], ytot[i], squares = sq[i], bg =
"white", fg = 1, add = TRUE, inch = FALSE): partial argument match of
'inch' to 'inches'
triangle.biplot: warning in arrows(xy[i, 1], xy[i, 2], xy[i + nl, 1],
xy[i + nl, 2], le = 0.1, ang = 15): partial argument match of 'le' to
'length'
triangle.biplot: warning in arrows(xy[i, 1], xy[i, 2], xy[i + nl, 1],
xy[i + nl, 2], le = 0.1, ang = 15): partial argument match of 'ang'
to 'angle'
triangle.param: warning in round(mini, dig = 4): partial argument match
of 'dig' to 'digits'
triangle.param: warning in round(maxi, dig = 4): partial argument match
of 'dig' to 'digits'
triangle.plot: warning in dudi.pca(ta, scale = FALSE, scann = FALSE):
partial argument match of 'scann' to 'scannf'
triangle.plot: warning in round(m[1], dig = 3): partial argument match
of 'dig' to 'digits'
triangle.plot: warning in round(m[2], dig = 3): partial argument match
of 'dig' to 'digits'
triangle.plot: warning in round(m[3], dig = 3): partial argument match
of 'dig' to 'digits'
witwitsepan : fun1: warning in dudi.coa(x, scann = FALSE): partial
argument match of 'scann' to 'scannf'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
bacteria.rda 13Kb 9Kb xz
capitales.rda 164Kb 100Kb bzip2
elec88.rda 19Kb 10Kb xz
hdpg.rda 524Kb 347Kb bzip2
irishdata.rda 14Kb 8Kb xz
lascaux.rda 41Kb 27Kb xz
mafragh.rda 10Kb 8Kb bzip2
perthi02.rda 24Kb 14Kb bzip2
tarentaise.rda 14Kb 8Kb bzip2
vegtf.rda 12Kb 8Kb xz
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable compilation flags in Makevars ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... NOTE
File 'd:/Rcompile/CRANpkg/lib/2.15/ade4/libs/i386/ade4.dll':
Found 'abort', possibly from 'abort' (C)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
File 'd:/Rcompile/CRANpkg/lib/2.15/ade4/libs/x64/ade4.dll':
Found 'abort', possibly from 'abort' (C)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console. The detected symbols
are linked into the code but might come from libraries and not actually
be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
- checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
- checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There were 3 notes.
See
'd:/Rcompile/CRANpkg/local/2.15/ade4.Rcheck/00check.log'
for details.