• using R Under development (unstable) (2012-02-27 r58511)
• using platform: x86_64-pc-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'NestedCohort/DESCRIPTION' ... OK
• this is package 'NestedCohort' version '1.1-2'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... NOTE
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
• checking whether package 'NestedCohort' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... NOTE
  Found the following CITATION file(s) in a non-standard place:
  CITATION
  Most likely 'inst/CITATION' should be used instead.
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
• loading checks for arch 'x64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  nested.coxph: no visible binding for global variable 'p.i.h.a.t.'
  nested.km: no visible binding for global variable 'p.i.h.a.t.'
  nested.stdsurv: no visible binding for global variable 'p.i.h.a.t.'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking for left-overs from vignette generation ... WARNING
  file 'inst/doc/Rplots.ps', 'inst/doc/Rplots.pdf' will not be installed: please remove it
• checking sizes of PDF files under 'inst/doc' ... OK
• checking installed files from 'inst/doc' ... NOTE
  The following files look like leftovers/mistakes:
  'NestedCohort.bbl'
  Please remove them from your package.
  The following files should probably not be installed:
  'S.sty'
  The following directories should probably not be installed:
  'auto'
  
  Consider the use of a .Rinstignore file: see 'Writing R Extensions',
  or move the vignette sources from 'inst/doc' to 'vignettes'.
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x64' ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... NOTE
  Error in re-building vignettes:
  ...
  "legend.text" is not a graphical parameter
  Warning in plot.xy(xy, type, ...) :
  "legend.pos" is not a graphical parameter
  Warning in axis(side = side, at = at, labels = labels, ...) :
  "legend.text" is not a graphical parameter
  Warning in axis(side = side, at = at, labels = labels, ...) :
  "legend.pos" is not a graphical parameter
  Warning in axis(side = side, at = at, labels = labels, ...) :
  "legend.text" is not a graphical parameter
  Warning in axis(side = side, at = at, labels = labels, ...) :
  "legend.pos" is not a graphical parameter
  Warning in box(...) : "legend.text" is not a graphical parameter
  Warning in box(...) : "legend.pos" is not a graphical parameter
  Warning in title(...) : "legend.text" is not a graphical parameter
  Warning in title(...) : "legend.pos" is not a graphical parameter
  Warning: running command '"d:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "NestedCohort.tex" -I "d:/RCompile/recent/R/share/texmf/tex/latex" -I "d:/RCompile/recent/R/share/texmf/bibtex/bst"' had status 1
  Error: running 'texi2dvi' on 'NestedCohort.tex' failed
  
  LaTeX errors:
  ! LaTeX Error: File `psfig.sty' not found.
  
  Type X to quit or <RETURN> to proceed,
  or enter new name. (Default extension: sty)
  
  Execution halted
  
• checking PDF version of manual ... OK
  WARNING: There was 1 warning.
  NOTE: There were 5 notes.
  See
  'd:/Rcompile/CRANpkg/local/2.15/NestedCohort.Rcheck/00check.log'
  for details.