• using R Under development (unstable) (2012-02-27 r58511)
• using platform: x86_64-pc-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'MetaQC/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'MetaQC' version '0.1.9'
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Package suggested but not available for checking: 'doMC'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'MetaQC' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• loading checks for arch 'x64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  GMT2List: no visible binding for global variable 'x'
  MetaQC: no visible global function definition for 'registerDoMC'
  MetaQC : .ConvertToGeneSetIdx: no visible binding for global variable
  'g'
  MetaQC : .ConvertToGeneSetIdx: no visible binding for global variable
  'd'
  MetaQC : .CalcPval: no visible binding for global variable 'i'
  MetaQC : .CalcPval: no visible binding for global variable 'w'
  MetaQC : .CalcPval: no visible binding for global variable 'j'
  MetaQC : .CalcPval: no visible binding for global variable 'b'
  MetaQC : EQC: no visible binding for global variable 'g'
  MetaQC : EQC: no visible binding for global variable 'w'
  MetaQC : AQCg: no visible binding for global variable 'i'
  MetaQC : AQCp: no visible binding for global variable 'i'
  MetaQC : CQCg: no visible binding for global variable 'dat'
  MetaQC : CQCg: no visible binding for global variable 'pv'
  MetaQC : CQCg: no visible binding for global variable 'i'
  MetaQC : CQCp: no visible binding for global variable 'dat'
  MetaQC : CQCp: no visible binding for global variable 'pv'
  MetaQC : CQCp: no visible binding for global variable 'ii'
  MetaQC : CQCp: no visible binding for global variable 'jj'
  MetaQC : CQCp: no visible binding for global variable 'i'
  MetaQC : IQC: no visible binding for global variable 'i'
  MetaQC : .CalcDistOfStudies: no visible binding for global variable
  'ii'
  MetaQC : .CalcDistOfStudies: no visible binding for global variable
  'jj'
  MetaQC : .CalcScores: no visible binding for global variable 'd'
  requireAll: no visible global function definition for 'biocLite'
• checking Rd files ... NOTE
  prepare_Rd: MetaQC-package.Rd:30-31: Dropping empty section \seealso
  prepare_Rd: MetaQC.Rd:55-57: Dropping empty section \details
  prepare_Rd: MetaQC.Rd:71-73: Dropping empty section \note
  prepare_Rd: cleanup.Rd:22-24: Dropping empty section \details
  prepare_Rd: cleanup.Rd:34-36: Dropping empty section \note
  prepare_Rd: plot.proto.Rd:25-27: Dropping empty section \details
  prepare_Rd: plot.proto.Rd:37-39: Dropping empty section \note
  prepare_Rd: print.proto.Rd:25-27: Dropping empty section \details
  prepare_Rd: print.proto.Rd:37-39: Dropping empty section \note
  prepare_Rd: requireAll.Rd:19-21: Dropping empty section \details
  prepare_Rd: requireAll.Rd:31-33: Dropping empty section \note
  prepare_Rd: requireAll.Rd:25-27: Dropping empty section \references
  prepare_Rd: requireAll.Rd:37-39: Dropping empty section \seealso
  prepare_Rd: runQC.Rd:38-40: Dropping empty section \details
  prepare_Rd: runQC.Rd:50-52: Dropping empty section \note
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x64' ... OK
• checking PDF version of manual ... OK
  NOTE: There were 3 notes.
  See
  'd:/Rcompile/CRANpkg/local/2.15/MetaQC.Rcheck/00check.log'
  for details.