• using R Under development (unstable) (2012-02-27 r58511)
• using platform: x86_64-pc-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'Hmisc/DESCRIPTION' ... OK
• this is package 'Hmisc' version '3.9-2'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'Hmisc' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• loading checks for arch 'x64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  Ecdf.default: warning in labcurve(curves, type = "s", lty = lty, col =
  col, opts = label.curves): partial argument match of 'col' to 'col.'
  Ecdf.formula: no visible global function definition for 'terms.inner'
  Ecdf.formula: no visible global function definition for
  'setup.2d.trellis'
  Function.areg.boot: possible error in assign(fun.name[i], g[[i]], frame
  = frame): unused argument(s) (frame = frame)
  Function.areg.boot: possible error in assign(fun.name[i], g[[i]], where
  = where): unused argument(s) (where = where)
  Function.transcan: possible error in assign(fun.name, f, where =
  where): unused argument(s) (where = where)
  [.transcan: ... may be used in an incorrect context: 'x[..., drop =
  drop]'
  [.transcan: ... may be used in an incorrect context: 'list(...)'
  areg.boot: warning in match.call(expand = FALSE): partial argument
  match of 'expand' to 'expand.dots'
  areg.boot: warning in sample(n, n, rep = TRUE): partial argument match
  of 'rep' to 'replace'
  aregImpute: warning in match.call(expand = FALSE): partial argument
  match of 'expand' to 'expand.dots'
  dataRep: warning in match.call(expand = FALSE): partial argument match
  of 'expand' to 'expand.dots'
  describe.formula: warning in match.call(expand = FALSE): partial
  argument match of 'expand' to 'expand.dots'
  do: no visible global function definition for 'unix'
  drawPlot : Points: no visible binding for global variable 'pch.to.use'
  eip: possible error in assign(name, g, where = f): unused argument(s)
  (where = f)
  event.chart : legnd: possible error in legend(..., marks = pch): unused
  argument(s) (marks = pch)
  event.chart: no visible global function definition for 'dev.ask'
  formatDateTime: no visible global function definition for 'timeDate'
  histSpike: no visible global function definition for 'oldCut'
  importConvertDateTime: no visible global function definition for
  'timeDate'
  impute.transcan: warning in assign(nam, v, env = .GlobalEnv): partial
  argument match of 'env' to 'envir'
  impute.transcan: possible error in assign(nam, v, where = where.out):
  unused argument(s) (where = where.out)
  impute.transcan: possible error in assign(nam, v, frame = frame.out):
  unused argument(s) (frame = frame.out)
  inverseFunction: multiple local function definitions for 'h' with
  different formal arguments
  latex.summary.formula.cross: no visible binding for global variable
  'col.just'
  latexTranslate: no visible binding for global variable 'alpha'
  latexTranslate: no visible binding for global variable 'delta'
  latexTranslate: no visible binding for global variable 'epsilon'
  latexTranslate: no visible binding for global variable 'varepsilon'
  latexTranslate: no visible binding for global variable 'zeta'
  latexTranslate: no visible binding for global variable 'eta'
  latexTranslate: no visible binding for global variable 'theta'
  latexTranslate: no visible binding for global variable 'vartheta'
  latexTranslate: no visible binding for global variable 'iota'
  latexTranslate: no visible binding for global variable 'lambda'
  latexTranslate: no visible binding for global variable 'mu'
  latexTranslate: no visible binding for global variable 'nu'
  latexTranslate: no visible binding for global variable 'xi'
  latexTranslate: no visible binding for global variable 'varpi'
  latexTranslate: no visible binding for global variable 'rho'
  latexTranslate: no visible binding for global variable 'varrho'
  latexTranslate: no visible binding for global variable 'sigma'
  latexTranslate: no visible binding for global variable 'varsigma'
  latexTranslate: no visible binding for global variable 'tau'
  latexTranslate: no visible binding for global variable 'upsilon'
  latexTranslate: no visible binding for global variable 'phi'
  latexTranslate: no visible binding for global variable 'carphi'
  latexTranslate: no visible binding for global variable 'chi'
  latexTranslate: no visible binding for global variable 'psi'
  latexTranslate: no visible binding for global variable 'omega'
  latexTranslate: no visible binding for global variable 'Delta'
  latexTranslate: no visible binding for global variable 'Theta'
  latexTranslate: no visible binding for global variable 'Lambda'
  latexTranslate: no visible binding for global variable 'Xi'
  latexTranslate: no visible binding for global variable 'Pi'
  latexTranslate: no visible binding for global variable 'Sigma'
  latexTranslate: no visible binding for global variable 'Upsilon'
  latexTranslate: no visible binding for global variable 'Phi'
  latexTranslate: no visible binding for global variable 'Psi'
  latexTranslate: no visible binding for global variable 'Omega'
  lookupSASContents: no visible binding for global variable 'NOBS'
  lookupSASContents: no visible binding for global variable 'memname'
  lookupSASContents: no visible binding for global variable 'memlabel'
  matrix2dataFrame: no visible binding for global variable
  'origAttributes'
  mtitle: no visible global function definition for 'unix'
  na.detail.response: possible error in eval(as.name(GFUN), local =
  FALSE): unused argument(s) (local = FALSE)
  nafitted.delete: no visible global function definition for
  'naresid.omit'
  nafitted.delete: no visible global function definition for
  'naresid.exclude'
  napredict.delete: no visible global function definition for
  'naresid.omit'
  naresid.delete: no visible global function definition for
  'naresid.omit'
  numericScale: no visible global function definition for 'axis.time'
  panel.Dotplot : Key: no visible global function definition for 'key'
  panel.Dotplot: multiple local function definitions for 'Key' with
  different formal arguments
  panel.Ecdf: warning in labcurve(curves, lty = lty[levnum], lwd =
  lwd[levnum], col = col[levnum], opts = lc, grid = .R., ...): partial
  argument match of 'col' to 'col.'
  panel.Ecdf : Key: no visible global function definition for 'key'
  panel.Ecdf: multiple local function definitions for 'Key' with
  different formal arguments
  panel.plsmo : <anonymous>: no visible global function definition for
  'key'
  panel.xYplot: warning in labcurve(curves, lty = lty[levnum], lwd =
  lwd[levnum], col = col[levnum], opts = lc, grid = TRUE, ...): partial
  argument match of 'col' to 'col.'
  panel.xYplot : Key: no visible global function definition for 'key'
  panel.xYplot: multiple local function definitions for 'Key' with
  different formal arguments
  plot.Quantile2: warning in labcurve(pi[1:2], pl = TRUE, lty = lty, col
  = col, xlim = xlim, ylim = ylim, opts = label.curves): partial
  argument match of 'col' to 'col.'
  plot.Quantile2: warning in labcurve(pi[i[-(1:2)]], pl = TRUE, lty =
  lty, col = col, xlim = xlim, ylim = ylim, opts = label.curves):
  partial argument match of 'col' to 'col.'
  plot.Quantile2: warning in labcurve(pi[i], pl = TRUE, lty = lty, col =
  col, xlim = xlim, ylim = ylim, opts = label.curves): partial argument
  match of 'col' to 'col.'
  plot.Quantile2: warning in labcurve(pi[5:6], pl = TRUE, lty = lty, col
  = col, xlim = xlim, ylim = ylim, opts = label.curves): partial
  argument match of 'col' to 'col.'
  plot.Quantile2: warning in labcurve(pi[4 + i[-(1:2)]], pl = TRUE, lty =
  lty, col = col, xlim = xlim, ylim = ylim, opts = label.curves):
  partial argument match of 'col' to 'col.'
  plot.Quantile2: warning in labcurve(pi[4 + i], pl = TRUE, lty = lty,
  col = col, xlim = xlim, ylim = ylim, opts = label.curves): partial
  argument match of 'col' to 'col.'
  plot.summary.formula.response: warning in dotchart2(z, groups = vnd,
  xlab = xlab, xlim = xlim, auxdata = if (superposeStrata) Ns else
  stats[, js - which[w]], auxtitle = "N", sort = FALSE, pch = pch[if
  (superposeStrata) is else w], dotfont = dotfont[w], add = add | w > 1
  | (is > 1 && superposeStrata), reset.par = FALSE, ...): partial
  argument match of 'sort' to 'sort.'
  plot.summary.formula.response : <anonymous>: no visible global function
  definition for 'key'
  plot.summary.formula.reverse: warning in dotchart2(zi, groups = vnd,
  xlab = xlab, xlim = xlim, sort = FALSE, pch = pch[i], dotfont =
  dotfont[i], add = i > 1, ...): partial argument match of 'sort' to
  'sort.'
  plot.summary.formula.reverse: warning in dotchart2(zi, groups = vnd,
  auxdata = ftstats, xlab = xlab, xlim = xlim, sort = FALSE, pch =
  pch[i], dotfont = dotfont[i], add = i > 1, ...): partial argument
  match of 'sort' to 'sort.'
  plot.summary.formula.reverse : <anonymous>: no visible global function
  definition for 'key'
  plot.summary.formula.reverse: warning in dotchart2(stj, xlab = nam,
  xlim = xlim, sort = FALSE, pch = c(91, if (FALSE) 183 else 16,
  93)[j], dotfont = dotfont[1], add = j > 1, ...): partial argument
  match of 'sort' to 'sort.'
  plsmo: warning in labcurve(curves, lty = lty, col = col, opts =
  label.curves, grid = grid): partial argument match of 'col' to 'col.'
  print.char.list: no visible binding for global variable
  'colnames.width'
  print.char.list: no visible binding for global variable
  'rownames.height'
  print.responseSummary: no visible binding for global variable 'attribs'
  ps.slide: no visible global function definition for 'unix'
  ps.slide: no visible binding for global variable 'ps.colors.rgb'
  ps.slide: no visible binding for global variable 'ps.fonts'
  ps.slide: warning in postscript(paste(file, ".ps", sep = ""), hor =
  hor, height = height, width = width, pointsize = 0.6 * pointsize *
  max(width/(30 * 12/72.27), height/(30 * 12/72.27/((1 + sqrt(5))/2))),
  print.it = FALSE, onefile = !eps): partial argument match of 'hor' to
  'horizontal'
  ps.slide: warning in postscript(paste(file, ".ps", sep = ""), hor =
  hor, print.it = FALSE, onefile = !eps): partial argument match of
  'hor' to 'horizontal'
  ps.slide: warning in postscript(paste(file, ".ps", sep = ""), hor =
  hor, height = height, width = width, pointsize = 0.6 * pointsize *
  max(width/(30 * 12/72.27), height/(30 * 12/72.27/((1 + sqrt(5))/2))),
  colors = cols, fonts = fonts, ...): partial argument match of 'hor'
  to 'horizontal'
  ps.slide: possible error in postscript(paste(file, ".ps", sep = ""),
  hor = hor, height = height, width = width, pointsize = 0.6 *
  pointsize * max(width/(30 * 12/72.27), height/(30 * 12/72.27/((1 +
  sqrt(5))/2))), colors = cols, fonts = fonts, ...): unused argument(s)
  (colors = cols)
  ps.slide: warning in postscript(paste(file, ".ps", sep = ""), hor =
  hor, colors = cols, fonts = fonts, ...): partial argument match of
  'hor' to 'horizontal'
  ps.slide: possible error in postscript(paste(file, ".ps", sep = ""),
  hor = hor, colors = cols, fonts = fonts, ...): unused argument(s)
  (colors = cols)
  ps.slide: warning in postscript(paste(file, ".ps", sep = ""), hor =
  hor, height = height, width = width, pointsize = 0.6 * pointsize *
  max(width/(30 * 12/72.27), height/(30 * 12/72.27/((1 + sqrt(5))/2))),
  fg = foreground, bg = background, family = font, ...): partial
  argument match of 'hor' to 'horizontal'
  requirePackage: ... may be used in an incorrect context
  rlegend: warning in strwidth(legend, u = "user", cex = cex): partial
  argument match of 'u' to 'units'
  rlegend: warning in strheight(legend, u = "user", cex = cex): partial
  argument match of 'u' to 'units'
  rm.boot : lldep: warning in eigen(cov, sym = TRUE): partial argument
  match of 'sym' to 'symmetric'
  rm.boot: warning in sample(clusters, rep = TRUE): partial argument
  match of 'rep' to 'replace'
  rm.boot: warning in sample(rr, n - lrr, rep = TRUE): partial argument
  match of 'rep' to 'replace'
  sas.get : <anonymous>: no visible global function definition for
  'is.dir'
  sas.get : file.is.readable: no visible global function definition for
  'access'
  sas.get: possible error in assign(name[i], dsi, where = where): unused
  argument(s) (where = where)
  setpdf: no visible global function definition for 'pdf.graph'
  setps : psfig: possible error in postscript(file = file, horizontal =
  FALSE, width = width, height = height, pointsize = pointsize, fonts =
  ps.fonts[fontNumber], font = 1, maximize = TRUE, onefile = onefile,
  print.it = FALSE): unused argument(s) (font = 1, maximize = TRUE)
  setps : psfig: possible error in postscript(file = file, horizontal =
  FALSE, width = width, height = height, pointsize = pointsize, fonts =
  ps.fonts[fontNumber], font = 1): unused argument(s) (font = 1)
  summary.formula: warning in match.call(expand = FALSE): partial
  argument match of 'expand' to 'expand.dots'
  summary.formula: no visible global function definition for
  'terms.inner'
  symbol.freq: warning in axis(1, at = 1:xp1, label = c(dx, "All/2"), srt
  = srtx, adj = if (srtx > 0) 1 else 0.5): partial argument match of
  'label' to 'labels'
  symbol.freq: warning in axis(2, at = 1:yp1, label = c(dy, "All/2"), adj
  = 1): partial argument match of 'label' to 'labels'
  symbol.freq: warning in axis(1, at = xp, label = dx, srt = srtx, adj =
  if (srtx > 0) 1 else 0.5): partial argument match of 'label' to
  'labels'
  symbol.freq: warning in axis(2, at = yp, label = dy): partial argument
  match of 'label' to 'labels'
  transcan: warning in match.call(expand = FALSE): partial argument match
  of 'expand' to 'expand.dots'
  transcan: no visible global function definition for 'terms.inner'
  transcan: no visible global function definition for 'rpart'
  transcan: no visible global function definition for 'rpart.control'
  uncbind: possible error in assign(paste(prefix, nn[i], suffix, sep =
  ""), x[, i], where = 1): unused argument(s) (where = 1)
  varclus: possible error in hclust(sim = x, method = method): unused
  argument(s) (sim = x)
  zoom: no visible binding for global variable 'usa'
  Found .Internal call in the following function:
  'substring2'
  with calls to .Internal functions
  'substr'
  
  Packages should not call .Internal(): it is not part of the API, for
  use only by R itself and subject to change without notice.
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... NOTE
  File 'd:/Rcompile/CRANpkg/lib/2.15/Hmisc/libs/i386/Hmisc.dll':
  Found 'abort', possibly from 'abort' (C)
  File 'd:/Rcompile/CRANpkg/lib/2.15/Hmisc/libs/x64/Hmisc.dll':
  Found 'abort', possibly from 'abort' (C)
  
  Compiled code should not call functions which might terminate R nor
  write to stdout/stderr instead of to the console. The detected symbols
  are linked into the code but might come from libraries and not actually
  be called.
  
  See 'Writing portable packages' in the 'Writing R Extensions' manual.
• checking examples ...
  ** running examples for arch 'i386' ... OK
  ** running examples for arch 'x64' ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ...
  ** running tests for arch 'i386' OK
  Running 'consolidate.R'
  ** running tests for arch 'x64' OK
  Running 'consolidate.R'
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  'd:/Rcompile/CRANpkg/local/2.15/Hmisc.Rcheck/00check.log'
  for details.