• using R Under development (unstable) (2012-02-27 r58511)
• using platform: x86_64-pc-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'BARD/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'BARD' version '1.24'
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Package suggested but not available for checking: 'multicore'
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking whether package 'BARD' can be installed ... OK
• checking installed package size ... NOTE
  installed size is 7.7Mb
  sub-directories of 1Mb or more:
  doc 2.2Mb
  libs 1.2Mb
  shapefiles 3.6Mb
• checking package directory ... OK
• checking for portable file names ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• loading checks for arch 'x64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
  ** checking whether the namespace can be loaded with stated dependencies ... OK
  ** checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File 'BARD/R/zzz.R':
  .onAttach calls:
  print(utils::citation("BARD"))
  
  Package startup functions should use 'packageStartupMessage' to
  generate messages.
  See section 'Good practice' in ?.onAttach.
  
  PMPreport: warning in scorePlans(tmpPlan, scoreFUN = scoreFUN): partial
  argument match of 'scoreFUN' to 'scoreFUNs'
  PMPreport: warning in scorePlans(tmpPlan, scoreFUN = sFUN): partial
  argument match of 'scoreFUN' to 'scoreFUNs'
  bardClusterExport : gets: warning in assign(n, v, env = .GlobalEnv):
  partial argument match of 'env' to 'envir'
  bardClusterExport: warning in get(name, env = .GlobalEnv): partial
  argument match of 'env' to 'envir'
  lapplyBardCluster.multicore : mclapplySafer: no visible global function
  definition for 'mclapply'
  lapplyBardCluster.snow: no visible binding for global variable
  'clusterApplyLB'
  lapplyBardCluster.snow: no visible binding for global variable
  'parLapply'
  plot.grob: no visible global function definition for 'grid.draw'
  refineGenoudPlan: warning in genoud(fn = genoudScoreFun, nvars =
  length(plan), pop.size = pop.size, hard.generation.limit = FALSE,
  max.generations = max.generations, wait.generation =
  wait.generations, MemoryMatrix = memMat, cluster = genCluster, P3 =
  0, P7 = 0, P4 = 0, P8 = 0, Domains = t(replicate(length(plan), c(1,
  ndists))), solution.tolerance = 0.001, boundary.enforcement = 2,
  print.level = print.level, data.type.int = T, starting.values =
  c(as.double(plan))): partial argument match of 'wait.generation' to
  'wait.generations'
  reportPlans: no visible global function definition for 'HTMLInitFile'
  reportPlans: no visible global function definition for 'HTML.title'
  reportPlans: no visible global function definition for 'HTMLEndFile'
  sdf2bard: no visible global function definition for 'spTransform'
  startBardCluster: no visible global function definition for
  'makeSOCKcluster'
  startBardCluster: no visible global function definition for 'parLapply'
  stopBardCluster: no visible global function definition for
  'stopCluster'
  Found .Internal call in the following function:
  'mrequire'
  with calls to .Internal functions
  'printDeferredWarnings'
  
  Packages should not call .Internal(): it is not part of the API, for
  use only by R itself and subject to change without notice.
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'nb2graph':
  'neighbors.nb'
  
  S3 methods shown with full name in documentation object 'basem<-.default':
  'basem<-.default' 'basem.default'
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter 'Writing R documentation files' in the 'Writing R
  Extensions' manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... NOTE
  File 'd:/Rcompile/CRANpkg/lib/2.15/BARD/libs/i386/BARD.dll':
  Found 'abort', possibly from 'abort' (C)
  File 'd:/Rcompile/CRANpkg/lib/2.15/BARD/libs/x64/BARD.dll':
  Found 'abort', possibly from 'abort' (C)
  
  Compiled code should not call functions which might terminate R nor
  write to stdout/stderr instead of to the console. The detected symbols
  are linked into the code but might come from libraries and not actually
  be called.
  
  See 'Writing portable packages' in the 'Writing R Extensions' manual.
• checking sizes of PDF files under 'inst/doc' ... OK
• checking installed files from 'inst/doc' ... NOTE
  The following files are already in R: 'jss.bst'
  Please remove them from your package.
  The following files should probably not be installed:
  'Makefile.alt', 'article.tex', 'bookreview.tex', 'codesnippet.tex',
  'fig_example.pdf'
  The following directories should probably not be installed:
  'JSSstyle'
  
  Consider the use of a .Rinstignore file: see 'Writing R Extensions',
  or move the vignette sources from 'inst/doc' to 'vignettes'.
• checking examples ...
  ** running examples for arch 'i386' ... ERROR
  Running examples in 'BARD-Ex.R' failed
  The error occurred in:
  
  
  R Under development (unstable) (2012-02-27 r58511)
  Copyright (C) 2012 The R Foundation for Statistical Computing
  ISBN 3-900051-07-0
  Platform: i386-pc-mingw32/i386 (32-bit)
  
  R is free software and comes with ABSOLUTELY NO WARRANTY.
  You are welcome to redistribute it under certain conditions.
  Type 'license()' or 'licence()' for distribution details.
  
  Natural language support but running in an English locale
  
  R is a collaborative project with many contributors.
  Type 'contributors()' for more information and
  'citation()' on how to cite R or R packages in publications.
  
  Type 'demo()' for some demos, 'help()' for on-line help, or
  'help.start()' for an HTML browser interface to help.
  Type 'q()' to quit R.
  
  > pkgname <- "BARD"
  > source(file.path(R.home("share"), "R", "examples-header.R"))
  > options(warn = 1)
  > options(pager = "console")
  > library('BARD')
  Loading required package: digest
  Error in loadNamespace(name) : there is no package called 'R2HTML'
  Error: package/namespace load failed for 'BARD'
  Execution halted
  ** running examples for arch 'x64' ... ERROR
  Running examples in 'BARD-Ex.R' failed
  The error occurred in:
  
  
  R Under development (unstable) (2012-02-27 r58511)
  Copyright (C) 2012 The R Foundation for Statistical Computing
  ISBN 3-900051-07-0
  Platform: x86_64-pc-mingw32/x64 (64-bit)
  
  R is free software and comes with ABSOLUTELY NO WARRANTY.
  You are welcome to redistribute it under certain conditions.
  Type 'license()' or 'licence()' for distribution details.
  
  Natural language support but running in an English locale
  
  R is a collaborative project with many contributors.
  Type 'contributors()' for more information and
  'citation()' on how to cite R or R packages in publications.
  
  Type 'demo()' for some demos, 'help()' for on-line help, or
  'help.start()' for an HTML browser interface to help.
  Type 'q()' to quit R.
  
  > pkgname <- "BARD"
  > source(file.path(R.home("share"), "R", "examples-header.R"))
  > options(warn = 1)
  > options(pager = "console")
  > library('BARD')
  Loading required package: digest
  Error in loadNamespace(name) : there is no package called 'R2HTML'
  Error: package/namespace load failed for 'BARD'
  Execution halted