• using R version 2.13.0 Under development (unstable) (2011-03-13 r54781)
• using platform: i386-apple-darwin9.8.0 (32-bit)
• using session charset: ASCII
• checking for file 'stepwise/DESCRIPTION' ... OK
• this is package 'stepwise' version '0.2-4'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking for executable files ... OK
• checking whether package 'stepwise' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
• loading checks for arch 'ppc'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
• loading checks for arch 'x86_64'
  ** checking whether the package can be loaded ... OK
  ** checking whether the package can be loaded with stated dependencies ... OK
  ** checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking examples ...
  ** running examples for arch 'i386' ... ERROR
  Running examples in 'stepwise-Ex.R' failed
  The error most likely occurred in:
  
  > ### Name: maxchi
  > ### Title: Stepwise detection of recombination breakpoints using MaxChi
  > ### Aliases: maxchi
  > ### Keywords: htest
  >
  > ### ** Examples
  > demo(maxchi)
  
  
  demo(maxchi)
  ---- ~~~~~~
  
  > inputFile<- system.file("data", "simulinfile", package = "stepwise")
  
  > breaks<-c(531,616,810)
  
  > WinHalfWidth<-30
  
  > permReps<-10
  
  > a<-maxchi(inputFile, breaks, WinHalfWidth, permReps)
  
  *** caught segfault ***
  address 0x696cd060, cause 'memory not mapped'
  
  Traceback:
  1: .Call("stepwise", input_file = as.character(input_file), breaks = as.integer(breaks), winHalfWidth = as.integer(winHalfWidth), permReps = as.integer(permReps), PACKAGE = "stepwise")
  2: maxchi(inputFile, breaks, WinHalfWidth, permReps)
  3: eval.with.vis(expr, envir, enclos)
  4: eval.with.vis(ei, envir)
  5: source(available, echo = echo, max.deparse.length = Inf, keep.source = TRUE)
  6: demo(maxchi)
  aborting ...
• elapsed time (check, wall clock): 0:28